BSMatch: Boundary Segmentation and Matching for Lipid Droplet Quantification in Diagnosis of Non-Alcoholic Fatty Liver Disease.

IF 6.7 2区 医学 Q1 COMPUTER SCIENCE, INFORMATION SYSTEMS
Tsung-Hsuan Wu, Hung-Chih Chiu, Jyun-Sin Wu, Wei-Jong Yang, Kuo-Sheng Cheng, Che-Wei Hsu, Shu-Hsien Wang, Joshua Tay Uyboco, Hung-Wen Tsai, Pau-Choo Chung
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引用次数: 0

Abstract

Hepatic steatosis is one of the most obvious indicators of nonalcoholic fatty liver disease. However, the presence of many regions with a similar color and shape as lipid droplets in the histopathological image complicates the task of detecting genuine lipid droplets using automated methods. Accordingly, the present study proposes a boundary segmentation and matching (BSMatch) algorithm for the segmentation of lipid droplets based on their unique boundary characteristics. A two-branch RnB-Unet model is trained to segment the regions and boundaries of the droplets, respectively, in accordance with a boundary matching (BM) loss which enforces the consistency between them. A boundary matching score (BMS) measure is then used to improve the precision of the instance segmentation evaluation process by discarding segmented regions which are not well-matched with their predicted boundaries. The experimental results obtained using a H&E-stained liver slide dataset show that BSMatch outperforms existing methods in terms of both the IoU and the F1-score. The BSMatch results are used to predict the fat percentage in hepatocytes (FPH) in liver whole slide images. The predicted FPH values are well correlated with the steatosis grades assigned by experienced pathologists. Thus, BSMatch appears to have significant promise for NAFLD diagnosis in clinical contexts.

BSMatch:非酒精性脂肪性肝病诊断中脂滴定量的边界分割与匹配。
肝脂肪变性是非酒精性脂肪肝最明显的指标之一。然而,在组织病理学图像中存在许多与脂滴相似颜色和形状的区域,这使得使用自动化方法检测真正的脂滴的任务变得复杂。因此,本研究基于脂滴独特的边界特征,提出了一种边界分割匹配(BSMatch)算法对脂滴进行分割。根据边界匹配损失(BM),训练一个两分支RnB-Unet模型,分别分割液滴的区域和边界,以增强它们之间的一致性。然后使用边界匹配分数(BMS)度量,通过丢弃与预测边界不匹配的分割区域来提高实例分割评估过程的精度。使用h&e染色的肝脏切片数据集获得的实验结果表明,BSMatch在IoU和f1评分方面都优于现有方法。BSMatch结果用于预测肝脏全切片图像中肝细胞脂肪百分比(FPH)。预测的FPH值与经验丰富的病理学家分配的脂肪变性等级密切相关。因此,BSMatch在临床诊断NAFLD方面具有重要的前景。
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来源期刊
IEEE Journal of Biomedical and Health Informatics
IEEE Journal of Biomedical and Health Informatics COMPUTER SCIENCE, INFORMATION SYSTEMS-COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
CiteScore
13.60
自引率
6.50%
发文量
1151
期刊介绍: IEEE Journal of Biomedical and Health Informatics publishes original papers presenting recent advances where information and communication technologies intersect with health, healthcare, life sciences, and biomedicine. Topics include acquisition, transmission, storage, retrieval, management, and analysis of biomedical and health information. The journal covers applications of information technologies in healthcare, patient monitoring, preventive care, early disease diagnosis, therapy discovery, and personalized treatment protocols. It explores electronic medical and health records, clinical information systems, decision support systems, medical and biological imaging informatics, wearable systems, body area/sensor networks, and more. Integration-related topics like interoperability, evidence-based medicine, and secure patient data are also addressed.
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