Constrained Structure Minimizations on Hyperspheres for Minimum Energy Path Following.

IF 5.6 2区 化学 Q1 CHEMISTRY, MEDICINAL
Jorge Alberto Sanchez Alvarez, Luis López-Sosa, Andreas M Köster, Patrizia Calaminici
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引用次数: 0

Abstract

In this work, a reliable and robust trust region method for restricted minimizations on hyperspheres is developed. The working equations of this new methodology are presented, together with their validation. The performance and characteristics of this new algorithm are discussed by a constrained minimization on a sphere using a two-dimensional Quapp model surface. The obtained results show that the proposed method for minimizations on hyperspheres guarantees convergence to constrained minima. Its enhanced numerical stability permits tight convergence criteria for constrained minimizations. The application of the new restricted minimizer in the framework of the hierarchical transition state finder and for the calculation of intrinsic reaction coordinates for 38 chemical reactions demonstrates its robustness and efficiency.

超球上最小能量路径跟踪的约束结构最小化。
本文提出了一种可靠、鲁棒的超球极限最小化信赖域方法。给出了这种新方法的工作方程,并对其进行了验证。利用二维Quapp模型曲面对球面进行约束最小化,讨论了该算法的性能和特点。结果表明,所提出的超球极小化方法保证了收敛到约束极小值。其增强的数值稳定性允许约束最小化的严格收敛准则。在层次过渡态查找器框架和38个化学反应的本征反应坐标计算中应用了新的受限极小化器,证明了它的鲁棒性和有效性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
CiteScore
9.80
自引率
10.70%
发文量
529
审稿时长
1.4 months
期刊介绍: The Journal of Chemical Information and Modeling publishes papers reporting new methodology and/or important applications in the fields of chemical informatics and molecular modeling. Specific topics include the representation and computer-based searching of chemical databases, molecular modeling, computer-aided molecular design of new materials, catalysts, or ligands, development of new computational methods or efficient algorithms for chemical software, and biopharmaceutical chemistry including analyses of biological activity and other issues related to drug discovery. Astute chemists, computer scientists, and information specialists look to this monthly’s insightful research studies, programming innovations, and software reviews to keep current with advances in this integral, multidisciplinary field. As a subscriber you’ll stay abreast of database search systems, use of graph theory in chemical problems, substructure search systems, pattern recognition and clustering, analysis of chemical and physical data, molecular modeling, graphics and natural language interfaces, bibliometric and citation analysis, and synthesis design and reactions databases.
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