Fanjie Xu, Wentao Guo, Feng Wang, Lin Yao, Hongshuai Wang, Fujie Tang, Zhifeng Gao, Linfeng Zhang, Weinan E, Zhong-Qun Tian, Jun Cheng
{"title":"Toward a unified benchmark and framework for deep learning-based prediction of nuclear magnetic resonance chemical shifts.","authors":"Fanjie Xu, Wentao Guo, Feng Wang, Lin Yao, Hongshuai Wang, Fujie Tang, Zhifeng Gao, Linfeng Zhang, Weinan E, Zhong-Qun Tian, Jun Cheng","doi":"10.1038/s43588-025-00783-z","DOIUrl":null,"url":null,"abstract":"<p><p>The study of structure-spectrum relationships is essential for spectral interpretation, impacting structural elucidation and material design. Predicting spectra from molecular structures is challenging due to their complex relationships. Here we introduce NMRNet, a deep learning framework using the SE(3) Transformer for atomic environment modeling, following a pretraining and fine-tuning paradigm. To support the evaluation of nuclear magnetic resonance chemical shift prediction models, we have established a comprehensive benchmark based on previous research and databases, covering diverse chemical systems. Applying NMRNet to these benchmark datasets, we achieve competitive performance in both liquid-state and solid-state nuclear magnetic resonance datasets, demonstrating its robustness and practical utility in real-world scenarios. Our work helps to advance deep learning applications in analytical and structural chemistry.</p>","PeriodicalId":74246,"journal":{"name":"Nature computational science","volume":" ","pages":""},"PeriodicalIF":12.0000,"publicationDate":"2025-03-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Nature computational science","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1038/s43588-025-00783-z","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
引用次数: 0
Abstract
The study of structure-spectrum relationships is essential for spectral interpretation, impacting structural elucidation and material design. Predicting spectra from molecular structures is challenging due to their complex relationships. Here we introduce NMRNet, a deep learning framework using the SE(3) Transformer for atomic environment modeling, following a pretraining and fine-tuning paradigm. To support the evaluation of nuclear magnetic resonance chemical shift prediction models, we have established a comprehensive benchmark based on previous research and databases, covering diverse chemical systems. Applying NMRNet to these benchmark datasets, we achieve competitive performance in both liquid-state and solid-state nuclear magnetic resonance datasets, demonstrating its robustness and practical utility in real-world scenarios. Our work helps to advance deep learning applications in analytical and structural chemistry.