Multichannel Contribution Aware Network for Prostate Cancer Grading in Histopathology Images.

IF 1.4 4区 生物学 Q4 BIOCHEMICAL RESEARCH METHODS
Junlai Qiu, Qingfeng Chen, Wei Lan, Junyue Cao
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引用次数: 0

Abstract

Gleason grading of prostate histopathology images is widely used by pathologists for diagnosis and prognosis. Spatial characteristics of cell and tissues through staining images is essential for accurate grading of prostate cancer. Although considerable efforts have been made to train grading models, they mainly rely on basic preprocessed images and largely overlook the intricate multiple staining aspects of histopathology images that are crucial for spatial information capture. This article proposes a novel deep learning model for automated prostate cancer grading by integrating several staining characteristics. Image deconvolution is applied to separate the multiple staining channels in the histopathology image, thereby enabling the model to identify effective feature information. A channel and pixel attention-based encoder is designed to extract cell and tissue structure information from multiple staining channel images. We propose a dual-branch decoder, where the classical convolutional neural network branch specializes in local feature extraction and the Transformer branch focuses on global feature extraction, to effectively fuse and refine features from different staining channels. Taking full advantage of the complementarity of multiple staining channels makes the features more compact and discriminative, leading to precise grading. Extensive experiments on relevant public datasets demonstrate the effectiveness and scalability of the proposed model.

组织病理图像中前列腺癌分级的多通道贡献感知网络。
前列腺组织病理图像的Gleason分级被病理学家广泛用于诊断和预后。通过染色图像了解细胞和组织的空间特征对于前列腺癌的准确分级至关重要。尽管在训练分级模型方面已经做出了相当大的努力,但它们主要依赖于基本的预处理图像,并且在很大程度上忽略了组织病理学图像中复杂的多重染色方面,而这些方面对于空间信息捕获至关重要。本文提出了一种新的深度学习模型,通过整合几个染色特征来实现前列腺癌的自动分级。利用图像反卷积分离组织病理图像中的多个染色通道,从而使模型能够识别有效的特征信息。设计了一种基于通道和像素注意力的编码器,用于从多个染色通道图像中提取细胞和组织结构信息。我们提出了一种双分支解码器,其中经典卷积神经网络分支专注于局部特征提取,而变压器分支专注于全局特征提取,以有效地融合和提炼来自不同染色通道的特征。充分利用多个染色通道的互补性,使特征更加紧凑和区分,从而精确分级。在相关公共数据集上的大量实验证明了该模型的有效性和可扩展性。
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来源期刊
Journal of Computational Biology
Journal of Computational Biology 生物-计算机:跨学科应用
CiteScore
3.60
自引率
5.90%
发文量
113
审稿时长
6-12 weeks
期刊介绍: Journal of Computational Biology is the leading peer-reviewed journal in computational biology and bioinformatics, publishing in-depth statistical, mathematical, and computational analysis of methods, as well as their practical impact. Available only online, this is an essential journal for scientists and students who want to keep abreast of developments in bioinformatics. Journal of Computational Biology coverage includes: -Genomics -Mathematical modeling and simulation -Distributed and parallel biological computing -Designing biological databases -Pattern matching and pattern detection -Linking disparate databases and data -New tools for computational biology -Relational and object-oriented database technology for bioinformatics -Biological expert system design and use -Reasoning by analogy, hypothesis formation, and testing by machine -Management of biological databases
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