Carlos Hernández–Pérez , Sebastian Podlipnik , Joan Ficapal , Susana Puig , Josep Malvehy , Verónica Vilaplana
{"title":"Comparative analysis and interpretability of survival models for melanoma prognosis","authors":"Carlos Hernández–Pérez , Sebastian Podlipnik , Joan Ficapal , Susana Puig , Josep Malvehy , Verónica Vilaplana","doi":"10.1016/j.compbiomed.2025.110027","DOIUrl":null,"url":null,"abstract":"<div><div>The increasing incidence of cutaneous melanoma highlights the critical need for precision medicine to optimize treatment strategies and improve patient outcomes. This study evaluated and compared the performance and interpretability of various survival models for melanoma patients. We analyzed survival outcomes, including overall survival (OS), specific survival (SS), and disease-free survival (DFS), using the Xarxa Melanoma database, which comprises data from over 9,000 patients across 19 hospitals collected over a decade. The performance of Cox Proportional Hazards, Random Survival Forest, XGBoost, DeepSurv, and DeepHit models was assessed using the Concordance Index (C-Index), time-dependent Area Under the Curve (tdAUC), ROC-AUC, and Inverse Brier score. Our analysis showed that the Random Survival Forest outperformed the other methods, achieving C-Index scores of 0.846 for OS, 0.869 for SS, and 0.846 for DFS. Furthermore, by applying an interpretability method specifically designed for survival analysis, we identified histological subtypes associated with poor prognoses. Additionally, this study reaffirms the established importance of the Breslow index as a key prognostic factor in melanoma survival prediction.</div></div>","PeriodicalId":10578,"journal":{"name":"Computers in biology and medicine","volume":"190 ","pages":"Article 110027"},"PeriodicalIF":7.0000,"publicationDate":"2025-03-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computers in biology and medicine","FirstCategoryId":"5","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0010482525003786","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
The increasing incidence of cutaneous melanoma highlights the critical need for precision medicine to optimize treatment strategies and improve patient outcomes. This study evaluated and compared the performance and interpretability of various survival models for melanoma patients. We analyzed survival outcomes, including overall survival (OS), specific survival (SS), and disease-free survival (DFS), using the Xarxa Melanoma database, which comprises data from over 9,000 patients across 19 hospitals collected over a decade. The performance of Cox Proportional Hazards, Random Survival Forest, XGBoost, DeepSurv, and DeepHit models was assessed using the Concordance Index (C-Index), time-dependent Area Under the Curve (tdAUC), ROC-AUC, and Inverse Brier score. Our analysis showed that the Random Survival Forest outperformed the other methods, achieving C-Index scores of 0.846 for OS, 0.869 for SS, and 0.846 for DFS. Furthermore, by applying an interpretability method specifically designed for survival analysis, we identified histological subtypes associated with poor prognoses. Additionally, this study reaffirms the established importance of the Breslow index as a key prognostic factor in melanoma survival prediction.
期刊介绍:
Computers in Biology and Medicine is an international forum for sharing groundbreaking advancements in the use of computers in bioscience and medicine. This journal serves as a medium for communicating essential research, instruction, ideas, and information regarding the rapidly evolving field of computer applications in these domains. By encouraging the exchange of knowledge, we aim to facilitate progress and innovation in the utilization of computers in biology and medicine.