Jialong Huang , Gaojie Li , Shichao Kan , Jianfeng Liu , Yixiong Liang
{"title":"An efficient framework based on large foundation model for cervical cytopathology whole slide image screening","authors":"Jialong Huang , Gaojie Li , Shichao Kan , Jianfeng Liu , Yixiong Liang","doi":"10.1016/j.bspc.2025.107859","DOIUrl":null,"url":null,"abstract":"<div><div>Cervical cytopathology whole slide image (WSI) screening primarily relies on detection-based approaches, which are limited by the high cost and labor-intensive nature of detailed annotations. Multiple Instance Learning (MIL), a weakly supervised paradigm using only slide-level labels, offers a promising alternative. However, existing MIL methods often depend on frozen pretrained models or self-supervised learning for feature extraction, which are either ineffective or computationally inefficient. To address these challenges, we propose a novel and efficient framework for cervical cytopathology WSI classification that leverages unsupervised and weakly supervised learning to enhance patch-level feature extraction. Specially, To tackle the high computational cost of training, our method introduces a mean pooling (MP)-based strategy to filter out high-risk patches, reducing the number of patches based on the sparse and dispersed nature of abnormal cells in WSIs. Additionally, we employ parameter-efficient fine-tuning (PEFT), where only the additional linear layers are trained, to significantly reduce the number of trainable parameters. Extensive experiments on the CSD and FNAC 2019 datasets demonstrate that our method consistently enhances the performance of various MIL frameworks, achieves state-of-the-art (SOTA) results, and enables faster inference speeds. Notably, on the CSD dataset, our method achieves an 8.87% improvement in specificity compared to existing approaches while maintaining the same sensitivity level of 97.84%. The code and trained models are publicly available at <span><span>https://github.com/CVIU-CSU/TCT-InfoNCE</span><svg><path></path></svg></span>.</div></div>","PeriodicalId":55362,"journal":{"name":"Biomedical Signal Processing and Control","volume":"107 ","pages":"Article 107859"},"PeriodicalIF":4.9000,"publicationDate":"2025-03-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biomedical Signal Processing and Control","FirstCategoryId":"5","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1746809425003702","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"ENGINEERING, BIOMEDICAL","Score":null,"Total":0}
引用次数: 0
Abstract
Cervical cytopathology whole slide image (WSI) screening primarily relies on detection-based approaches, which are limited by the high cost and labor-intensive nature of detailed annotations. Multiple Instance Learning (MIL), a weakly supervised paradigm using only slide-level labels, offers a promising alternative. However, existing MIL methods often depend on frozen pretrained models or self-supervised learning for feature extraction, which are either ineffective or computationally inefficient. To address these challenges, we propose a novel and efficient framework for cervical cytopathology WSI classification that leverages unsupervised and weakly supervised learning to enhance patch-level feature extraction. Specially, To tackle the high computational cost of training, our method introduces a mean pooling (MP)-based strategy to filter out high-risk patches, reducing the number of patches based on the sparse and dispersed nature of abnormal cells in WSIs. Additionally, we employ parameter-efficient fine-tuning (PEFT), where only the additional linear layers are trained, to significantly reduce the number of trainable parameters. Extensive experiments on the CSD and FNAC 2019 datasets demonstrate that our method consistently enhances the performance of various MIL frameworks, achieves state-of-the-art (SOTA) results, and enables faster inference speeds. Notably, on the CSD dataset, our method achieves an 8.87% improvement in specificity compared to existing approaches while maintaining the same sensitivity level of 97.84%. The code and trained models are publicly available at https://github.com/CVIU-CSU/TCT-InfoNCE.
期刊介绍:
Biomedical Signal Processing and Control aims to provide a cross-disciplinary international forum for the interchange of information on research in the measurement and analysis of signals and images in clinical medicine and the biological sciences. Emphasis is placed on contributions dealing with the practical, applications-led research on the use of methods and devices in clinical diagnosis, patient monitoring and management.
Biomedical Signal Processing and Control reflects the main areas in which these methods are being used and developed at the interface of both engineering and clinical science. The scope of the journal is defined to include relevant review papers, technical notes, short communications and letters. Tutorial papers and special issues will also be published.