Transcriptome research conducted on the liver and spleen of Jinhu grouper (Epinephelus fuscoguttatus♀ × Epinephelus tukula♂) reveals the mechanism in response to Vibrio anguillarum infection
{"title":"Transcriptome research conducted on the liver and spleen of Jinhu grouper (Epinephelus fuscoguttatus♀ × Epinephelus tukula♂) reveals the mechanism in response to Vibrio anguillarum infection","authors":"Huimin Duan , Yongsheng Tian , Zhentong Li","doi":"10.1016/j.cbd.2025.101482","DOIUrl":null,"url":null,"abstract":"<div><div><em>Vibrio anguillarum</em> serves as a pathogenic organism in aquaculture, leading to a lethal hemolytic septicemia in aquatic species. Whereas little study has evaluated the molecular mechanism of the infection caused by <em>V. anguillarum</em> in Jinhu grouper. In this study, analysis of the transcriptome was conducted on the liver and spleen tissues from Jinhu groupers infected with <em>V. anguillarum</em> infection. We identified 2978 DEGs in the liver group and 2506 DEGs in spleen group, including 1689 and 1502 up-regulated genes and 1289 and 1004 down-regulated genes, respectively. Gene set enrichment analysis revealed a significant reduction in genes associated with metabolism such as carbon metabolism and glycolysis/gluconeogenesis in the liver, while upregulation of genes linked to the above pathways as well as in the citrate cycle in the spleen. In addition, the upregulated genes in the liver and spleen are both enriched in the cell cycle. Subsequent investigation into the principal DEGs implicated in the TLR pathways showed that <em>V. anguillarum</em> infection may activate the TLR pathway by overexpression of the <em>tlr</em>5 and promote the synthesis of proinflammatory cytokines <em>il1β</em> and <em>il-8</em>. Among these, 11 genes related to metabolism, cell cycle and immunity were selected and characterized. Overall, our research indicates that <em>V. anguillarum</em> can affect the metabolism and cell cycle while also triggering immune defense reactions in Jinhu grouper.</div></div>","PeriodicalId":55235,"journal":{"name":"Comparative Biochemistry and Physiology D-Genomics & Proteomics","volume":"55 ","pages":"Article 101482"},"PeriodicalIF":2.2000,"publicationDate":"2025-03-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Comparative Biochemistry and Physiology D-Genomics & Proteomics","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1744117X2500070X","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Vibrio anguillarum serves as a pathogenic organism in aquaculture, leading to a lethal hemolytic septicemia in aquatic species. Whereas little study has evaluated the molecular mechanism of the infection caused by V. anguillarum in Jinhu grouper. In this study, analysis of the transcriptome was conducted on the liver and spleen tissues from Jinhu groupers infected with V. anguillarum infection. We identified 2978 DEGs in the liver group and 2506 DEGs in spleen group, including 1689 and 1502 up-regulated genes and 1289 and 1004 down-regulated genes, respectively. Gene set enrichment analysis revealed a significant reduction in genes associated with metabolism such as carbon metabolism and glycolysis/gluconeogenesis in the liver, while upregulation of genes linked to the above pathways as well as in the citrate cycle in the spleen. In addition, the upregulated genes in the liver and spleen are both enriched in the cell cycle. Subsequent investigation into the principal DEGs implicated in the TLR pathways showed that V. anguillarum infection may activate the TLR pathway by overexpression of the tlr5 and promote the synthesis of proinflammatory cytokines il1β and il-8. Among these, 11 genes related to metabolism, cell cycle and immunity were selected and characterized. Overall, our research indicates that V. anguillarum can affect the metabolism and cell cycle while also triggering immune defense reactions in Jinhu grouper.
期刊介绍:
Comparative Biochemistry & Physiology (CBP) publishes papers in comparative, environmental and evolutionary physiology.
Part D: Genomics and Proteomics (CBPD), focuses on “omics” approaches to physiology, including comparative and functional genomics, metagenomics, transcriptomics, proteomics, metabolomics, and lipidomics. Most studies employ “omics” and/or system biology to test specific hypotheses about molecular and biochemical mechanisms underlying physiological responses to the environment. We encourage papers that address fundamental questions in comparative physiology and biochemistry rather than studies with a focus that is purely technical, methodological or descriptive in nature.