Molecular Dynamics-Assisted Interaction Between HABT and PI3K Enzyme: Exploring Metastable States for Promising Cancer Diagnosis Applications

IF 3.4 3区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY
Rodrigo Mancini Santos, Teodorico Castro Ramalho
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Abstract

Local nonequilibrium approach has been used for many purposes when dealing with biological systems. Not only for unraveling important features of cancer development, a disease that affects the lives of many people worldwide, but also to understand drug–target interactions in a more real scenario, which can help to combat this disease. Therefore, aiming to contribute to new strategies against cancer, the present work used this approach to investigate the spectroscopy of 2-(2′-hydroxy-4′-aminophenyl)benzothiazole (HABT) when interacting with the PI3K enzyme, a widely associated target for the mentioned illness. The study consisted of evaluating the Excited State Intramolecular Proton Transfer (ESIPT) performance of HABT, in spectroscopic terms, when interacting with the PI3K enzyme in a local nonequilibrium regime. This scenario could be considered by investigating the metastable states of HABT in this system. From this, it was possible to observe that the ESIPT performance of HABT considerably differs when comparing the solution and protein environments, where 63% have appropriate geometry in the protein environment, against 97% in the aqueous environment. Thus, from an entirely theoretical methodology, the present work provides insights when modeling biological systems and contributes significantly to a better comprehension of promising probes for cancer diagnosis.

Abstract Image

分子动力学辅助HABT和PI3K酶之间的相互作用:探索有希望的癌症诊断应用的亚稳态
局部非平衡方法在处理生物系统时被用于许多目的。这不仅是为了揭示癌症发展的重要特征,这种疾病影响着全世界许多人的生活,而且也是为了在更真实的情况下了解药物-靶标相互作用,这有助于对抗这种疾病。因此,为了促进新的抗癌策略,本工作使用这种方法研究了2-(2 ' -羟基-4 ' -氨基苯基)苯并噻唑(HABT)与PI3K酶相互作用时的光谱,PI3K酶是上述疾病的广泛相关靶标。该研究包括在光谱方面评估HABT在局部非平衡状态下与PI3K酶相互作用时的激发态分子内质子转移(ESIPT)性能。这种情况可以通过研究该系统中HABT的亚稳态来考虑。由此可以观察到,当比较溶液和蛋白质环境时,HABT的ESIPT性能有很大差异,在蛋白质环境中,63%的HABT具有合适的几何形状,而在水环境中,这一比例为97%。因此,从一个完全的理论方法,目前的工作提供了见解建模的生物系统,并有助于更好地理解有前途的探针癌症诊断。
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来源期刊
CiteScore
6.60
自引率
3.30%
发文量
247
审稿时长
1.7 months
期刊介绍: This distinguished journal publishes articles concerned with all aspects of computational chemistry: analytical, biological, inorganic, organic, physical, and materials. The Journal of Computational Chemistry presents original research, contemporary developments in theory and methodology, and state-of-the-art applications. Computational areas that are featured in the journal include ab initio and semiempirical quantum mechanics, density functional theory, molecular mechanics, molecular dynamics, statistical mechanics, cheminformatics, biomolecular structure prediction, molecular design, and bioinformatics.
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