{"title":"Dual-stream cross-modal fusion alignment network for survival analysis.","authors":"Jinmiao Song, Yatong Hao, Shuang Zhao, Peng Zhang, Qilin Feng, Qiguo Dai, Xiaodong Duan","doi":"10.1093/bib/bbaf103","DOIUrl":null,"url":null,"abstract":"<p><p>Survival prediction serves as a pivotal component in precision oncology, enabling the optimization of treatment strategies through mortality risk assessment. While the integration of histopathological images and genomic profiles offers enhanced potential for patient stratification, existing methodologies are constrained by two fundamental limitations: (i) insufficient attention to fine-grained local features in favor of global representations, and (ii) suboptimal cross-modal fusion strategies that either neglect intrinsic correlations or discard modality-specific information. To address these challenges, we propose DSCASurv, a novel cross-modal fusion alignment framework designed to explore and integrate intrinsic correlations across multimodal data, thereby improving the accuracy of survival prediction. Specifically, DSCASurv leverages the local feature extraction capabilities of convolutional layers and the long-range dependency modeling of scanning state space models to extract intra-modal representations, while generating cross-modal representations through dual parallel mixer architectures. A cross-modal attention module functions as a bridge for inter-modal information exchange and complementary information transfer. The framework ultimately integrates all intra-modal representations to generate survival predictions by enhancing and recalibrating complementary information. Extensive experiments on five benchmark cancer datasets demonstrate the superior performance of our approach compared to existing methods.</p>","PeriodicalId":9209,"journal":{"name":"Briefings in bioinformatics","volume":"26 2","pages":""},"PeriodicalIF":6.8000,"publicationDate":"2025-03-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11926988/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Briefings in bioinformatics","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1093/bib/bbaf103","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0
Abstract
Survival prediction serves as a pivotal component in precision oncology, enabling the optimization of treatment strategies through mortality risk assessment. While the integration of histopathological images and genomic profiles offers enhanced potential for patient stratification, existing methodologies are constrained by two fundamental limitations: (i) insufficient attention to fine-grained local features in favor of global representations, and (ii) suboptimal cross-modal fusion strategies that either neglect intrinsic correlations or discard modality-specific information. To address these challenges, we propose DSCASurv, a novel cross-modal fusion alignment framework designed to explore and integrate intrinsic correlations across multimodal data, thereby improving the accuracy of survival prediction. Specifically, DSCASurv leverages the local feature extraction capabilities of convolutional layers and the long-range dependency modeling of scanning state space models to extract intra-modal representations, while generating cross-modal representations through dual parallel mixer architectures. A cross-modal attention module functions as a bridge for inter-modal information exchange and complementary information transfer. The framework ultimately integrates all intra-modal representations to generate survival predictions by enhancing and recalibrating complementary information. Extensive experiments on five benchmark cancer datasets demonstrate the superior performance of our approach compared to existing methods.
期刊介绍:
Briefings in Bioinformatics is an international journal serving as a platform for researchers and educators in the life sciences. It also appeals to mathematicians, statisticians, and computer scientists applying their expertise to biological challenges. The journal focuses on reviews tailored for users of databases and analytical tools in contemporary genetics, molecular and systems biology. It stands out by offering practical assistance and guidance to non-specialists in computerized methodologies. Covering a wide range from introductory concepts to specific protocols and analyses, the papers address bacterial, plant, fungal, animal, and human data.
The journal's detailed subject areas include genetic studies of phenotypes and genotypes, mapping, DNA sequencing, expression profiling, gene expression studies, microarrays, alignment methods, protein profiles and HMMs, lipids, metabolic and signaling pathways, structure determination and function prediction, phylogenetic studies, and education and training.