Arthur Cousson, Frédéric Mahé, Ulysse Guyet, Damase Razafimahafaly, Laetitia Bernard
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引用次数: 0
Abstract
Summary: NanoASV is a conda environment and snakemake-based workflow using state of the art bioinformatics software to process full-length SSU rRNA (16S/18S) amplicons acquired with Oxford Nanopore Sequencing technology. Its strength lies in reproducibility, portability and the possibility to run offline, allowing in-field analysis. It can be installed on the Nanopore MK1C sequencing device and process data locally.
Availability: Source code and documentation are freely available at https://github.com/ImagoXV/NanoASV - Zenodo archive https://doi.org/10.5281/zenodo.14730742.
Supplementary information: Supplementary data are available at Bioinformatics online.
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