Identifying key drivers in a stochastic dynamical system through estimation of transfer entropy between univariate and multivariate time series.

IF 2.2 3区 物理与天体物理 Q2 PHYSICS, FLUIDS & PLASMAS
Julian Lee
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Abstract

Transfer entropy (TE) is a widely used tool for quantifying causal relationships in stochastic dynamical systems. Traditionally, TE and its conditional variants are applied pairwise between dynamic variables to infer these relationships. However, identifying key drivers in such systems requires a measure of the causal influence exerted by each component on the entire system. I propose using outgoing transfer entropy (OutTE), the transfer entropy from a given variable to the collection of remaining variables, to quantify the causal influence of the variable on the rest of the system. Conversely, the incoming transfer entropy (InTE) is also defined to quantify the causal influence received by a component from the rest of the system. Since OutTE and InTE involve transfer entropy between univariate and multivariate time series, naive estimation methods can result in significant errors, especially when the number of variables is large relative to the number of samples. To address this, I introduce a novel estimation scheme that computes outgoing and incoming TE only between significantly interacting partners. The feasibility and effectiveness of this approach are demonstrated using synthetic data and real oral microbiota data. The method successfully identifies the bacterial species known to be key players in the bacterial community, highlighting its potential for uncovering causal drivers in complex systems.

通过估计单变量和多变量时间序列之间的传递熵来识别随机动力系统中的关键驱动因素。
传递熵(TE)是一种广泛使用的量化随机动力系统因果关系的工具。传统上,TE及其条件变量在动态变量之间成对应用,以推断这些关系。然而,识别这些系统中的关键驱动因素需要衡量每个组成部分对整个系统施加的因果影响。我建议使用外向传递熵(OutTE),即从给定变量到剩余变量集合的传递熵,来量化变量对系统其余部分的因果影响。相反,输入传递熵(InTE)也被定义为量化一个组件从系统其余部分接收到的因果影响。由于OutTE和InTE涉及单变量和多变量时间序列之间的传递熵,因此朴素估计方法可能导致显著误差,特别是当变量数量相对于样本数量较大时。为了解决这个问题,我引入了一种新的估计方案,该方案仅在重要交互伙伴之间计算传出和传入TE。利用合成数据和真实口腔微生物群数据验证了该方法的可行性和有效性。该方法成功地鉴定了已知的细菌群落中的关键角色细菌种类,突出了其在复杂系统中揭示因果驱动因素的潜力。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Physical Review E
Physical Review E PHYSICS, FLUIDS & PLASMASPHYSICS, MATHEMAT-PHYSICS, MATHEMATICAL
CiteScore
4.50
自引率
16.70%
发文量
2110
期刊介绍: Physical Review E (PRE), broad and interdisciplinary in scope, focuses on collective phenomena of many-body systems, with statistical physics and nonlinear dynamics as the central themes of the journal. Physical Review E publishes recent developments in biological and soft matter physics including granular materials, colloids, complex fluids, liquid crystals, and polymers. The journal covers fluid dynamics and plasma physics and includes sections on computational and interdisciplinary physics, for example, complex networks.
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