Employing Automated Machine Learning (AutoML) Methods to Facilitate the In Silico ADMET Properties Prediction.

Abstract

The rationale for using ADMET prediction tools in the early drug discovery paradigm is to guide the design of new compounds with favorable ADMET properties and ultimately minimize the attrition rates of drug failures. Artificial intelligence (AI) in in silico ADMET modeling has gained momentum due to its high-throughput and low-cost attributes. In this study, we developed a machine learning model capable of predicting 11 ADMET properties of chemical compounds. Each model was constructed by combining one of 40 classification algorithms including random forest (RF), extreme gradient boosting (XGB), support vector machine (SVM), and gradient boosting (GB) with one of three predefined hyperparameter configurations. This process can be efficiently performed using automated machine learning (AutoML) methods, which automatically search for the best combination of model algorithms and optimized hyperparameters. We developed optimal predictive models for 11 different ADMET properties using the Hyperopt-sklearn AutoML method. All of the developed models depicted an area under the ROC curve (AUC) >0.8. Furthermore, our developed models outperformed most of the ADMET properties and showed comparable performance in other properties when evaluated on external data sets and compared with published predictive models. Our results support the applicability of AutoML in ADMET prediction and will be helpful for ADMET prediction in early-stage drug discovery.