Generating Medical Reports With a Novel Deep Learning Architecture

IF 2.5 4区 计算机科学 Q2 ENGINEERING, ELECTRICAL & ELECTRONIC
Murat Ucan, Buket Kaya, Mehmet Kaya
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引用次数: 0

Abstract

The writing of medical reports by doctors in hospitals is a critical and sensitive process that is time-consuming, prone to human error, and requires medical experts on site. Existing work on autonomous medical report generation using medical images as input has not achieved sufficiently high success. The goal of this paper is to present a new, fast, and high-performance method. For the autonomous generation of paragraph-level medical reports. A deep learning-based hybrid encoder–decoder architecture called G-CNX is developed to generate meaningful reports. ConvNeXtBase is used on the encoder side, and GRU-based RNN is used on the decoder side. Images and reports from the Indiana University Chest X-ray and ROCOv2 data sets were used in the training, validation, and testing processes of the study. The results of the experiments showed that the autonomously generated medical reports had the highest performance compared to other studies in the literature. In the Indiana University Chest X-ray data set, success rates of 0.6544, 0.5035, 0.3682, 0.2766, 0.2766, and 0.4277 were obtained in Bleu-1, Bleu-2, Bleu-3, Bleu-4, and Rouge evaluation metrics, respectively. In the ROCOv2 data set, success scores of 0.5593 and 0.3990 were obtained in Bleu-1 and Rouge evaluation metrics, respectively. In addition to numerical quantifiable analysis, the results of the study were also analyzed observationally and based on density plots. Statistical significance tests were also conducted to prove the reliability of the results. The results show that the test results obtained in the study have semantic properties similar to those of reports written by real doctors and that the autonomous reports produced are consistent and reliable. The proposed method can improve the efficiency of medical reporting, reduce the workload of specialized doctors, and improve the quality of diagnosis and treatment processes.

Abstract Image

使用新颖的深度学习架构生成医疗报告
医院医生撰写医疗报告是一个关键而敏感的过程,既耗时又容易出现人为错误,还需要医疗专家在场。现有的使用医学图像作为输入的自主医学报告生成工作尚未取得足够高的成功。本文的目标是提出一种新的、快速的、高性能的方法。用于自主生成分段医疗报告。开发了一种基于深度学习的混合编码器-解码器架构,称为G-CNX,以生成有意义的报告。在编码器端使用ConvNeXtBase,在解码器端使用基于gru的RNN。来自印第安纳大学胸部x光片和ROCOv2数据集的图像和报告被用于研究的训练、验证和测试过程。实验结果表明,与文献中其他研究相比,自主生成的医学报告具有最高的性能。在印第安纳大学胸片数据集中,blue -1、blue -2、blue -3、blue -4和Rouge评估指标的成功率分别为0.6544、0.5035、0.3682、0.2766、0.2766和0.4277。在ROCOv2数据集中,blue -1和Rouge评价指标的成功评分分别为0.5593和0.3990。除了数值定量分析外,还对研究结果进行了观测分析和基于密度图的分析。为了证明结果的可靠性,还进行了统计显著性检验。结果表明,本研究获得的测试结果与真实医生撰写的报告具有相似的语义属性,生成的自主报告具有一致性和可靠性。该方法可以提高医疗报告的效率,减少专科医生的工作量,提高诊疗质量。
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来源期刊
International Journal of Imaging Systems and Technology
International Journal of Imaging Systems and Technology 工程技术-成像科学与照相技术
CiteScore
6.90
自引率
6.10%
发文量
138
审稿时长
3 months
期刊介绍: The International Journal of Imaging Systems and Technology (IMA) is a forum for the exchange of ideas and results relevant to imaging systems, including imaging physics and informatics. The journal covers all imaging modalities in humans and animals. IMA accepts technically sound and scientifically rigorous research in the interdisciplinary field of imaging, including relevant algorithmic research and hardware and software development, and their applications relevant to medical research. The journal provides a platform to publish original research in structural and functional imaging. The journal is also open to imaging studies of the human body and on animals that describe novel diagnostic imaging and analyses methods. Technical, theoretical, and clinical research in both normal and clinical populations is encouraged. Submissions describing methods, software, databases, replication studies as well as negative results are also considered. The scope of the journal includes, but is not limited to, the following in the context of biomedical research: Imaging and neuro-imaging modalities: structural MRI, functional MRI, PET, SPECT, CT, ultrasound, EEG, MEG, NIRS etc.; Neuromodulation and brain stimulation techniques such as TMS and tDCS; Software and hardware for imaging, especially related to human and animal health; Image segmentation in normal and clinical populations; Pattern analysis and classification using machine learning techniques; Computational modeling and analysis; Brain connectivity and connectomics; Systems-level characterization of brain function; Neural networks and neurorobotics; Computer vision, based on human/animal physiology; Brain-computer interface (BCI) technology; Big data, databasing and data mining.
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