CLA-UNet: Convolution and Focused Linear Attention Fusion for Tumor Cell Nucleus Segmentation

IF 3 4区 计算机科学 Q2 ENGINEERING, ELECTRICAL & ELECTRONIC
Wei Guo, Zhanxu Liu, Yu Ou
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引用次数: 0

Abstract

The accurate diagnosis of tumors is crucial for improving treatment outcomes. To precisely delineate the nucleus regions of tumor cells in hematoxylin and eosin (H&E) stained tissue images and reduce computational overhead, we propose a novel encoder-decoder architecture named Convolution and focused linear attention fusion UNet (CLA-UNet), which integrates depthwise separable convolution and convolution-focused linear attention into the U-Net network. The innovation of this study is reflected in the following three aspects: first, at the skip connections, it utilizes the Global–Local Feature Fusion and Split-Input Transformer (GLFS Transformer) block to extract global feature information, which is then input to the corresponding layers of the decoder; second, it employs depthwise separable convolution blocks to construct the backbone network, thereby deepening the network; finally, it adds a channel attention module at the decoder to focus on important channel information. Experimental results on the MoNuSeg public database of tumor cells show that the algorithm achieves an IoU, Dice score, precision, and recall of 66.18%, 79.57%, 83.23%, and 76.91%, respectively. Compared with other segmentation methods, this algorithm demonstrates superior segmentation performance. The model proposed in this study significantly outperforms other comparison models in segmentation results, while maintaining an extremely low parameter count and computational cost. The lightweight design of the model facilitates the promotion and application of this research.

准确诊断肿瘤对提高治疗效果至关重要。为了在苏木精和伊红(H&E)染色的组织图像中精确划分肿瘤细胞核区域并减少计算开销,我们提出了一种名为 "卷积和聚焦线性注意融合 UNet(CLA-UNet)"的新型编码器-解码器架构,它将深度可分离卷积和卷积聚焦线性注意集成到 U-Net 网络中。这项研究的创新体现在以下三个方面:首先,在跳转连接处,它利用全局-局部特征融合和分割输入变换器(GLFS 变换器)模块提取全局特征信息,然后将其输入到解码器的相应层;其次,它利用深度可分离卷积模块构建骨干网络,从而加深了网络的深度;最后,它在解码器处增加了一个信道关注模块,以关注重要的信道信息。在 MoNuSeg 肿瘤细胞公共数据库上的实验结果表明,该算法的 IoU、Dice 分数、精确度和召回率分别达到了 66.18%、79.57%、83.23% 和 76.91%。与其他分割方法相比,该算法表现出更优越的分割性能。本研究提出的模型在分割结果上明显优于其他比较模型,同时保持了极低的参数数量和计算成本。该模型的轻量级设计有利于这项研究的推广和应用。
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来源期刊
International Journal of Imaging Systems and Technology
International Journal of Imaging Systems and Technology 工程技术-成像科学与照相技术
CiteScore
6.90
自引率
6.10%
发文量
138
审稿时长
3 months
期刊介绍: The International Journal of Imaging Systems and Technology (IMA) is a forum for the exchange of ideas and results relevant to imaging systems, including imaging physics and informatics. The journal covers all imaging modalities in humans and animals. IMA accepts technically sound and scientifically rigorous research in the interdisciplinary field of imaging, including relevant algorithmic research and hardware and software development, and their applications relevant to medical research. The journal provides a platform to publish original research in structural and functional imaging. The journal is also open to imaging studies of the human body and on animals that describe novel diagnostic imaging and analyses methods. Technical, theoretical, and clinical research in both normal and clinical populations is encouraged. Submissions describing methods, software, databases, replication studies as well as negative results are also considered. The scope of the journal includes, but is not limited to, the following in the context of biomedical research: Imaging and neuro-imaging modalities: structural MRI, functional MRI, PET, SPECT, CT, ultrasound, EEG, MEG, NIRS etc.; Neuromodulation and brain stimulation techniques such as TMS and tDCS; Software and hardware for imaging, especially related to human and animal health; Image segmentation in normal and clinical populations; Pattern analysis and classification using machine learning techniques; Computational modeling and analysis; Brain connectivity and connectomics; Systems-level characterization of brain function; Neural networks and neurorobotics; Computer vision, based on human/animal physiology; Brain-computer interface (BCI) technology; Big data, databasing and data mining.
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