{"title":"Theoretical evidence of the CO\\(_{2}\\) reduction by a Mo-based complex: a DFT study based on the reaction force decomposed into four components","authors":"Jorge I. Martínez-Araya","doi":"10.1007/s00894-025-06335-6","DOIUrl":null,"url":null,"abstract":"<div><h3>Context</h3><p>The conversion of carbon dioxide into methanoic acid through direct hydrogenation with H<span>\\(_2\\)</span> in the gas phase implies overcoming a high activation energy (more than 60 kcal mol <span>\\(^{-1}\\)</span>) that makes the process kinetically infeasible. In this study, the use of the [(PY<span>\\(_5\\)</span>Me<span>\\(_2\\)</span>)Mo(III)(H)(OH)]<span>\\(^{+}\\)</span> complex instead of H<span>\\(_2\\)</span> lowered the activation energy of the hydrogenation by 98.5%. Reaction mechanism in the presence and absence of the Mo-based complex is analyzed through the reaction force, its components, and their respective reaction works. It was found that the high activation energy for the direct hydrogenation of CO<span>\\(_2\\)</span> with H<span>\\(_2\\)</span> is a consequence of a predominance of three types of reaction force components acting as retarding forces while a fourth type of reaction force component is acting as a driving force from the reactant state until the transition state. On the contrary, the low activation energy for the hydrogenation of CO<span>\\(_2\\)</span> assisted by the Molybdenum-based complex is a consequence of opposing types of force components balancing each other, where two act as retarding forces against two reaction force components acting as driving forces.</p><h3>Method</h3><p>Quantum chemistry calculations were performed through DFT methods with the BP86 density functional along with MWB28 pseudopotentials including a proper basis set for Mo and 6-31+G(d,p) basis set for the remaining atoms implemented in Gaussian 16. AOMix post-SCF software was employed to determine bond orders on stationary points. The reaction force analysis focused on the reaction mechanisms of both chemical reactions using numerical differentiation of energy profiles with OriginPro 2020.</p></div>","PeriodicalId":651,"journal":{"name":"Journal of Molecular Modeling","volume":"31 4","pages":""},"PeriodicalIF":2.1000,"publicationDate":"2025-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s00894-025-06335-6.pdf","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Modeling","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1007/s00894-025-06335-6","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Context
The conversion of carbon dioxide into methanoic acid through direct hydrogenation with H\(_2\) in the gas phase implies overcoming a high activation energy (more than 60 kcal mol \(^{-1}\)) that makes the process kinetically infeasible. In this study, the use of the [(PY\(_5\)Me\(_2\))Mo(III)(H)(OH)]\(^{+}\) complex instead of H\(_2\) lowered the activation energy of the hydrogenation by 98.5%. Reaction mechanism in the presence and absence of the Mo-based complex is analyzed through the reaction force, its components, and their respective reaction works. It was found that the high activation energy for the direct hydrogenation of CO\(_2\) with H\(_2\) is a consequence of a predominance of three types of reaction force components acting as retarding forces while a fourth type of reaction force component is acting as a driving force from the reactant state until the transition state. On the contrary, the low activation energy for the hydrogenation of CO\(_2\) assisted by the Molybdenum-based complex is a consequence of opposing types of force components balancing each other, where two act as retarding forces against two reaction force components acting as driving forces.
Method
Quantum chemistry calculations were performed through DFT methods with the BP86 density functional along with MWB28 pseudopotentials including a proper basis set for Mo and 6-31+G(d,p) basis set for the remaining atoms implemented in Gaussian 16. AOMix post-SCF software was employed to determine bond orders on stationary points. The reaction force analysis focused on the reaction mechanisms of both chemical reactions using numerical differentiation of energy profiles with OriginPro 2020.
期刊介绍:
The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling.
Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry.
Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.