Machine Learning Approaches for Predicting Progression to Alzheimer's Disease in Patients with Mild Cognitive Impairment.

IF 1.6 4区 医学 Q4 ENGINEERING, BIOMEDICAL
Fatih Gelir, Taymaz Akan, Sait Alp, Emrah Gecili, Md Shenuarin Bhuiyan, Elizabeth A Disbrow, Steven A Conrad, John A Vanchiere, Christopher G Kevil, Mohammad Alfrad Nobel Bhuiyan
{"title":"Machine Learning Approaches for Predicting Progression to Alzheimer's Disease in Patients with Mild Cognitive Impairment.","authors":"Fatih Gelir, Taymaz Akan, Sait Alp, Emrah Gecili, Md Shenuarin Bhuiyan, Elizabeth A Disbrow, Steven A Conrad, John A Vanchiere, Christopher G Kevil, Mohammad Alfrad Nobel Bhuiyan","doi":"10.1007/s40846-024-00918-z","DOIUrl":null,"url":null,"abstract":"<p><strong>Purpose: </strong>Alzheimer's disease (AD), a neurodegenerative disorder, is a condition that impairs cognition, memory, and behavior. Mild cognitive impairment (MCI), a transitional stage before AD, urgently needs the development of prediction models for conversion from MCI to AD.</p><p><strong>Method: </strong>This study used machine learning methods to predict whether MCI subjects would develop AD, highlighting the importance of biomarkers (biological indicators from neuroimaging, such as MRI and PET scans, and molecular assays from cerebrospinal fluid or blood) and non-biomarker features in AD research and clinical practice. These indicators aid in early diagnosis, disease monitoring, and the development of potential treatments for MCI subjects. Using baseline data, which includes measurements of different biomarkers, we predicted disease progression at the patient's last visit. The Shapley value explanation (SHAP) technique was used to identify key features for predicting patient progression.</p><p><strong>Results: </strong>The study used the ADNI database to evaluate the effectiveness of eight classification methods for predicting progression from MCI to AD. Four fundamental data sampling approaches were compared to balance the dataset and reduce overfitting. The SHAP technique improved the ability to identify biomarkers and non-biomarker features, enhancing the prediction of disease progression. NEAR-MISS was found to be the most advantageous sampling method, while XGBoost was found to be the superior classification method, offering enhanced accuracy and predictive power.</p><p><strong>Conclusion: </strong>The proposed SHAP for feature selection combined with XGBoost may provide improved predictive accuracy in diagnosing Alzheimer's patients.</p>","PeriodicalId":50133,"journal":{"name":"Journal of Medical and Biological Engineering","volume":"45 1","pages":"63-83"},"PeriodicalIF":1.6000,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11876274/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Medical and Biological Engineering","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.1007/s40846-024-00918-z","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/12/24 0:00:00","PubModel":"Epub","JCR":"Q4","JCRName":"ENGINEERING, BIOMEDICAL","Score":null,"Total":0}
引用次数: 0

Abstract

Purpose: Alzheimer's disease (AD), a neurodegenerative disorder, is a condition that impairs cognition, memory, and behavior. Mild cognitive impairment (MCI), a transitional stage before AD, urgently needs the development of prediction models for conversion from MCI to AD.

Method: This study used machine learning methods to predict whether MCI subjects would develop AD, highlighting the importance of biomarkers (biological indicators from neuroimaging, such as MRI and PET scans, and molecular assays from cerebrospinal fluid or blood) and non-biomarker features in AD research and clinical practice. These indicators aid in early diagnosis, disease monitoring, and the development of potential treatments for MCI subjects. Using baseline data, which includes measurements of different biomarkers, we predicted disease progression at the patient's last visit. The Shapley value explanation (SHAP) technique was used to identify key features for predicting patient progression.

Results: The study used the ADNI database to evaluate the effectiveness of eight classification methods for predicting progression from MCI to AD. Four fundamental data sampling approaches were compared to balance the dataset and reduce overfitting. The SHAP technique improved the ability to identify biomarkers and non-biomarker features, enhancing the prediction of disease progression. NEAR-MISS was found to be the most advantageous sampling method, while XGBoost was found to be the superior classification method, offering enhanced accuracy and predictive power.

Conclusion: The proposed SHAP for feature selection combined with XGBoost may provide improved predictive accuracy in diagnosing Alzheimer's patients.

预测轻度认知障碍患者阿尔茨海默病进展的机器学习方法。
目的:阿尔茨海默病(AD)是一种神经退行性疾病,是一种损害认知、记忆和行为的疾病。轻度认知障碍(Mild cognitive impairment, MCI)是AD前的过渡阶段,迫切需要建立MCI向AD转化的预测模型。方法:本研究使用机器学习方法预测MCI受试者是否会发展为AD,强调生物标志物(来自神经影像学的生物指标,如MRI和PET扫描,以及来自脑脊液或血液的分子检测)和非生物标志物特征在AD研究和临床实践中的重要性。这些指标有助于MCI受试者的早期诊断、疾病监测和潜在治疗方法的发展。使用基线数据,包括不同生物标志物的测量,我们预测了患者最后一次就诊时的疾病进展。Shapley值解释(SHAP)技术用于确定预测患者进展的关键特征。结果:该研究使用ADNI数据库评估了8种预测MCI向AD进展的分类方法的有效性。比较了四种基本的数据采样方法来平衡数据集并减少过拟合。SHAP技术提高了识别生物标志物和非生物标志物特征的能力,增强了对疾病进展的预测。发现NEAR-MISS是最有利的采样方法,而XGBoost是更优的分类方法,具有更高的准确性和预测能力。结论:基于特征选择的SHAP与XGBoost相结合可提高阿尔茨海默病患者的预测准确性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
CiteScore
4.30
自引率
5.00%
发文量
81
审稿时长
3 months
期刊介绍: The purpose of Journal of Medical and Biological Engineering, JMBE, is committed to encouraging and providing the standard of biomedical engineering. The journal is devoted to publishing papers related to clinical engineering, biomedical signals, medical imaging, bio-informatics, tissue engineering, and so on. Other than the above articles, any contributions regarding hot issues and technological developments that help reach the purpose are also included.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信