ForestForward: visualizing and accessing integrated world forest data from the last 50 years.

IF 3.4 4区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY
E L Tejada-Gutiérrez, J Mateo Fornés, F Solsona, R Alves
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引用次数: 0

Abstract

Mitigating the effects of environmental exploitation on forests requires robust data analysis tools to inform sustainable management strategies and enhance ecosystem resilience. Access to extensive, integrated plant biodiversity data, spanning decades, is essential for this purpose. However, such data are often fragmented across diverse datasets with varying standards, posing two key challenges: first, integrating these datasets into a unified, well-structured data warehouse, and second, handling the vast volume of data using big data technologies to analyze and monitor the temporal evolution of ecosystems. To address these challenges, we developed and used an extract, transform, and load (ETL) protocol that curated and integrates 4482 forestry datasets from around the world, dating back to the 18th century, into a 100-GB data warehouse containing over 172 million records sourced from the Global Biodiversity Information Facility repository. We implemented Python scripts and a NoSQL MongoDB database to streamline and automate the ETL process, using the data warehouse to create the ForestForward web platform. ForestForward is a free, user-friendly application developed using the Django framework, which enables users to consult, download, and visualize the curated data. The platform allows users to explore data layers by year and observe the temporal evolution of ecosystems through visual representations. Database URL: https://forestforward.udl.cat.

ForestForward:可视化和访问过去50年的综合世界森林数据。
减轻环境开发对森林的影响需要强大的数据分析工具,为可持续管理战略提供信息,并增强生态系统的复原力。为此目的,获取跨越数十年的广泛、综合的植物生物多样性数据至关重要。然而,这些数据往往分散在不同标准的不同数据集中,这带来了两个关键挑战:首先,将这些数据集集成到一个统一的、结构良好的数据仓库中;其次,使用大数据技术处理大量数据,以分析和监测生态系统的时间演变。为了应对这些挑战,我们开发并使用了一个提取、转换和加载(ETL)协议,该协议将来自世界各地的4482个林业数据集(可追溯到18世纪)整理并集成到一个100gb的数据仓库中,其中包含来自全球生物多样性信息设施存储库的1.72亿多条记录。我们实现了Python脚本和NoSQL MongoDB数据库来简化和自动化ETL过程,使用数据仓库创建ForestForward web平台。ForestForward是一个使用Django框架开发的免费、用户友好的应用程序,它使用户可以查询、下载和可视化精选数据。该平台允许用户按年探索数据层,并通过可视化表示观察生态系统的时间演变。数据库地址:https://forestforward.udl.cat。
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来源期刊
Database: The Journal of Biological Databases and Curation
Database: The Journal of Biological Databases and Curation MATHEMATICAL & COMPUTATIONAL BIOLOGY-
CiteScore
9.00
自引率
3.40%
发文量
100
审稿时长
>12 weeks
期刊介绍: Huge volumes of primary data are archived in numerous open-access databases, and with new generation technologies becoming more common in laboratories, large datasets will become even more prevalent. The archiving, curation, analysis and interpretation of all of these data are a challenge. Database development and biocuration are at the forefront of the endeavor to make sense of this mounting deluge of data. Database: The Journal of Biological Databases and Curation provides an open access platform for the presentation of novel ideas in database research and biocuration, and aims to help strengthen the bridge between database developers, curators, and users.
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