Population genetic data (COI, ddRAD) of Sialislutaria (Insecta, Megaloptera) from the Emscher catchment (Germany).

IF 1 4区 环境科学与生态学 Q3 BIODIVERSITY CONSERVATION
Biodiversity Data Journal Pub Date : 2025-02-21 eCollection Date: 2025-01-01 DOI:10.3897/BDJ.13.e141997
Martina Weiss, Florian Leese
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引用次数: 0

Abstract

Background: In urban river systems, fragmentation of habitats and in-stream dispersal barriers play a major role in shaping the population genetic structure of freshwater macroinvertebrate species. In small, fragmented populations, effects of genetic drift and inbreeding are enhanced, which can lead to increased population differentiation and genetic diversity loss. One formerly strongly degraded and fragmented stream system in a highly urbanised area is the Emscher catchment in North Rhine-Westphalia, Germany. Major restoration efforts have led to an improvement of water and habitat quality over the past 20 years also in the formerly polluted tributaries, for example, the Boye catchment. However, the analysis of the population structure of two different amphipod and isopod species has revealed that some populations are still strongly isolated, indicating persisting gene flow barriers. In contrast, the effects are expected to be less pronounced in merolimnic species, which have an adult winged life stage, such as the alderfly Sialislutaria (Linnaeus, 1758) . However, this species was much less abundant in the Boye catchment and not found in adjacent catchments (only 9 of 41 sampling sites), reducing the power of possible analyses.

New information: As no population genetic studies of S.lutaria have to our knowledge been published so far and genetic resources are generally scarce for this species, we generated and present here population genetic data for 70 S.lutaria specimens for the mitochondrial cytochrome c oxidase I (COI) gene and, more importantly, high resolution genomic single nucleotide polymorphism (SNP) data for 71 specimens, generated with double-digest restriction site-associated sequencing (ddRAD-seq). These data can be valuable for further studies, analysing the population genetic structure, dispersal pathways and potential gene flow barriers for S.lutaria on a larger geographic scale. Additional to presenting the data, we also give first insights in the population structure on a small geographic scale (area of approx. 15 km2). While the population differentiation was generally low, as expected on this small scale, we still found that gene flow was not equally strong between all populations, but that one population played a central role as a source and sink population, which cannot only be explained by the distance between populations.

埃姆舍集水区(德国)Sialislutaria(昆虫纲,巨翅目)的种群遗传数据(COI、ddRAD)。
背景:在城市河流系统中,生境破碎化和河内扩散屏障对淡水大型无脊椎动物种群遗传结构的形成起着重要作用。在小而分散的种群中,遗传漂变和近亲繁殖的影响增强,这可能导致种群分化加剧和遗传多样性丧失。德国北莱茵-威斯特伐利亚州的Emscher集水区曾经是高度城市化地区的一个严重退化和破碎的河流系统。在过去的20年里,主要的恢复工作也改善了水和栖息地的质量,包括以前受污染的支流,例如Boye集水区。然而,对两种不同的片足类和等足类物种的种群结构分析表明,一些种群仍然处于高度隔离状态,表明基因流动障碍仍然存在。相比之下,这种影响在具有成年有翼生命阶段的merolimic物种中就不那么明显了,例如alderfly Sialislutaria (Linnaeus, 1758)。然而,该物种在Boye流域的数量要少得多,在邻近的流域中也没有发现(41个采样点中只有9个),这降低了可能分析的能力。新信息:由于据我们所知,目前还没有关于鹿角霉的群体遗传研究发表,而且该物种的遗传资源普遍匮乏,我们在这里生成并呈现了70个鹿角霉线粒体细胞色素c氧化酶I (COI)基因的群体遗传数据,更重要的是,通过双酶切限制性位点相关测序(ddRAD-seq)生成了71个标本的高分辨率基因组单核苷酸多态性(SNP)数据。这些数据可为进一步研究大地理范围内鹿角霉的种群遗传结构、传播途径和潜在的基因流动障碍提供参考。除了展示数据外,我们还首次深入了解了小地理范围(约为2000平方米)的人口结构。15平方公里)。虽然在这个小尺度上,种群分化程度普遍较低,但我们仍然发现,所有种群之间的基因流动并不是同等强烈的,而是一个种群作为源种群和汇种群发挥了核心作用,这不能仅仅用种群之间的距离来解释。
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来源期刊
Biodiversity Data Journal
Biodiversity Data Journal Agricultural and Biological Sciences-Ecology, Evolution, Behavior and Systematics
CiteScore
2.20
自引率
7.70%
发文量
283
审稿时长
6 weeks
期刊介绍: Biodiversity Data Journal (BDJ) is a community peer-reviewed, open-access, comprehensive online platform, designed to accelerate publishing, dissemination and sharing of biodiversity-related data of any kind. All structural elements of the articles – text, morphological descriptions, occurrences, data tables, etc. – will be treated and stored as DATA, in accordance with the Data Publishing Policies and Guidelines of Pensoft Publishers. The journal will publish papers in biodiversity science containing taxonomic, floristic/faunistic, morphological, genomic, phylogenetic, ecological or environmental data on any taxon of any geological age from any part of the world with no lower or upper limit to manuscript size.
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