Predicting Longitudinal Visual Field Progression with Class Imbalanced Data.

IF 6.7 2区 医学 Q1 COMPUTER SCIENCE, INFORMATION SYSTEMS
Ling Chen, Chun-Hung Chen, Wei Wang, Da-Wen Lu, Vincent S Tseng
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引用次数: 0

Abstract

Glaucoma is the leading cause of irreversible blindness worldwide. The clinical standard for glaucoma diagnosis and progression tracking remains visual field (VF) testing via standard automated perimetry. One outstanding challenge of many ophthalmic prediction tasks is the issue of class imbalance, where the majority class outnumbers the minority class(es). Although this issue has been reported in several prior studies on the prediction of VF progression or glaucoma, it has not been addressed in the context of longitudinal VF data. In this work, we proposed, VF-Transformer, a transformer-based framework for VF progression prediction based on longitudinal VF examination results. In particular, we addressed the class imbalance issue by incorporating our proposed inverted class-dependent temperature (ICDT) loss and weight normalization. The proposed framework was developed and evaluated on a public VF dataset and further validated on an external hospital dataset, using accuracy, sensitivity, specificity, and area under the receiver operating characteristic curve (AUC) as evaluation metrics. Extensive experiments and comparisons with existing state-of-the-art methods and class imbalance handling strategies confirmed the effectiveness of the proposed framework in predicting VF progression in the presence of class imbalance.

青光眼是导致全球不可逆失明的主要原因。青光眼诊断和进展跟踪的临床标准仍然是通过标准自动周边测量法进行视野(VF)测试。许多眼科预测任务面临的一个突出挑战是类别失衡问题,即多数类别超过少数类别。虽然这一问题在之前的几项关于 VF 进展或青光眼预测的研究中已有报道,但在纵向 VF 数据的背景下,这一问题尚未得到解决。在这项工作中,我们提出了一个基于变压器的 VF-Transformer 框架,用于根据纵向 VF 检查结果预测 VF 进展。特别是,我们通过结合我们提出的倒置类依赖温度(ICDT)损失和权重归一化,解决了类不平衡问题。我们使用准确度、灵敏度、特异性和接收者工作特征曲线下面积(AUC)作为评估指标,在公共 VF 数据集上开发并评估了所提出的框架,并在外部医院数据集上进一步验证了该框架。广泛的实验以及与现有最先进方法和类失衡处理策略的比较证实了所提出的框架在类失衡情况下预测心房颤动进展的有效性。
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来源期刊
IEEE Journal of Biomedical and Health Informatics
IEEE Journal of Biomedical and Health Informatics COMPUTER SCIENCE, INFORMATION SYSTEMS-COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
CiteScore
13.60
自引率
6.50%
发文量
1151
期刊介绍: IEEE Journal of Biomedical and Health Informatics publishes original papers presenting recent advances where information and communication technologies intersect with health, healthcare, life sciences, and biomedicine. Topics include acquisition, transmission, storage, retrieval, management, and analysis of biomedical and health information. The journal covers applications of information technologies in healthcare, patient monitoring, preventive care, early disease diagnosis, therapy discovery, and personalized treatment protocols. It explores electronic medical and health records, clinical information systems, decision support systems, medical and biological imaging informatics, wearable systems, body area/sensor networks, and more. Integration-related topics like interoperability, evidence-based medicine, and secure patient data are also addressed.
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