Methyl formate synthesis via S\(\mathrm {_N}\)Acyl esterification on interstellar ice mantles

IF 2.1 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Giulia M. Bovolenta, Stefan Vogt-Geisse
{"title":"Methyl formate synthesis via S\\(\\mathrm {_N}\\)Acyl esterification on interstellar ice mantles","authors":"Giulia M. Bovolenta,&nbsp;Stefan Vogt-Geisse","doi":"10.1007/s00894-025-06310-1","DOIUrl":null,"url":null,"abstract":"<div><h3>Context</h3><p>Methyl formate (MF) has been detected in several interstellar environments, but whether or not the formation of this molecule takes place in the gas phase or on the ices of interstellar grains is still unclear. In this study, we explore the synthesis of methyl formate through the nucleophilic acyl substitution (S<span>\\(_{\\text {N}}\\)</span>Acyl) reaction between methanol (CH<span>\\(_{3}\\)</span>OH) and formic acid (HCOOH) on amorphous solid water, which is the main component of interstellar ice mantles.</p><h3>Methods</h3><p>Using density functional theory (DFT), we model MF formation by sampling HCOOH in different catalytic sites on the water clusters with CH<span>\\(_{3}\\)</span>OH, and vice versa, for initial reactant configurations. We select the initial binding modes from the binding energy distributions of both reactant species. We assess the energy and synchronicity of the reaction by analyzing the reaction mechanisms through intrinsic reaction coordinate (IRC) energy, reaction force, and reaction electronic flux profiles. Using Wiberg bond order derivatives, we identify reaction events linked to hidden transition states that are encountered along the reaction coordinate.</p></div>","PeriodicalId":651,"journal":{"name":"Journal of Molecular Modeling","volume":"31 3","pages":""},"PeriodicalIF":2.1000,"publicationDate":"2025-02-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Modeling","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1007/s00894-025-06310-1","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

Context

Methyl formate (MF) has been detected in several interstellar environments, but whether or not the formation of this molecule takes place in the gas phase or on the ices of interstellar grains is still unclear. In this study, we explore the synthesis of methyl formate through the nucleophilic acyl substitution (S\(_{\text {N}}\)Acyl) reaction between methanol (CH\(_{3}\)OH) and formic acid (HCOOH) on amorphous solid water, which is the main component of interstellar ice mantles.

Methods

Using density functional theory (DFT), we model MF formation by sampling HCOOH in different catalytic sites on the water clusters with CH\(_{3}\)OH, and vice versa, for initial reactant configurations. We select the initial binding modes from the binding energy distributions of both reactant species. We assess the energy and synchronicity of the reaction by analyzing the reaction mechanisms through intrinsic reaction coordinate (IRC) energy, reaction force, and reaction electronic flux profiles. Using Wiberg bond order derivatives, we identify reaction events linked to hidden transition states that are encountered along the reaction coordinate.

星际冰幔上S \(\mathrm {_N}\)酰基酯化合成甲酸甲酯
甲酸甲酯(MF)已经在几个星际环境中被检测到,但这种分子的形成是发生在气相还是在星际颗粒的冰上仍不清楚。在本研究中,我们探索了甲醇(CH \(_{3}\) OH)和甲酸(HCOOH)在星际冰膜的主要成分无定形固体水上通过亲核酰基取代(S \(_{\text {N}}\) acyl)反应合成甲酸甲酯。方法利用密度泛函理论(DFT),我们通过用CH \(_{3}\) OH对水簇上不同催化位点的HCOOH进行采样来模拟MF的形成,反之亦然,对于初始反应构型。我们从两种反应物的结合能分布中选择初始结合模式。我们通过反应内蕴坐标(IRC)能量、反应力和反应电子通量谱分析反应机理,评价反应的能量和同步性。使用Wiberg键阶导数,我们确定了与沿反应坐标遇到的隐藏过渡态相关的反应事件。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信