mapPat: tracking pathogens evolution in space and time.

IF 2.4 Q2 MATHEMATICAL & COMPUTATIONAL BIOLOGY

Bioinformatics advances Pub Date : 2025-02-07 eCollection Date: 2025-01-01 DOI:10.1093/bioadv/vbaf015

Erika Ferrandi, Graziano Pesole, Matteo Chiara

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引用次数: 0

Abstract

Motivation: The COVID-19 pandemic highlighted the importance of genomic surveillance for monitoring pathogens evolution, mitigating the spread of infectious disorders, and informing decision-making by public health authorities. Since the need for the summarization and interpretation of large bodies of data, computational methods are critical for the implementation of effective genomic surveillance strategies.

Results: Here, we introduce mapPat, an R Shiny application for the interactive visualization of pathogens genomic data in space and time. mapPat is designed as a user-friendly dashboard and allows the dynamic monitoring of the evolution of variants, lineages, and mutations in the genome of a pathogen at glance through informative geographic maps and elegant data visuals. mapPat provides a fine-grained map of pathogens evolution and circulation and represents a useful addition to the catalogue of bioinformatics methods for the genomic surveillance of pathogens.

Availability and implementation: mapPat is available at GitHub (https://github.com/F3rika/mapPat.git).

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来源期刊

Bioinformatics advances

CiteScore

1.60

自引率

0.00%

发文量