pFedBCC: Personalizing Federated multi-target domain adaptive segmentation via Bi-pole Collaborative Calibration

IF 4.9 2区 医学 Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
Huaqi Zhang , Pengyu Wang , Jie Liu , Jing Qin
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引用次数: 0

Abstract

Background and Objective:

Multi-target domain adaptation (MTDA) is a well-established technology for unsupervised segmentation. It can significantly reduce the workload of large-scale data annotations, but assumes that each domain data can be freely accessed. However, data privacy limit its deployment in real-world medical scenes. Aiming at this problem, federated learning (FL) commits a paradigm to handle private cross-institution data.

Methods:

This paper makes the first attempt to apply FedMTDA to medical image segmentation by proposing a personalized Federated Bi-pole Collaborative Calibration (pFedBCC) framework, which leverages unannotated private client data and a public source-domain model to learn a global model at the central server for unsupervised multi-type immunohistochemically (IHC) image segmentation. Concretely, pFedBCC tackles two significant challenges in FedMTDA including client-side prediction drift and server-side aggregation drift via Semantic-affinity-driven Personalized Label Calibration (SPLC) and Source-knowledge-oriented Consistent Gradient Calibration (SCGC). To alleviate local prediction drift, SPLC personalizes a cross-domain graph reasoning module for each client, which achieves semantic-affinity alignment between high-level source- and target-domain features to produce pseudo labels that are semantically consistent with source-domain labels to guide client training. To further alleviate global aggregation drift, SCGC develops a new conflict-gradient clipping scheme, which takes the source-domain gradient as a guidance to ensure that all clients update with similar gradient directions and magnitudes, thereby improving the generalization of the global model.

Results:

pFedBCC is evaluated on private and public IHC benchmarks, including the proposed MT-IHC dataset, and the panCK, BCData, DLBC-Morph and LYON19 datasets. Overall, pFedBCC achieves the best performance of 88.8% PA on MT-IHC, as well as 88.4% PA on the LYON19 dataset, respectively.

Conclusions:

The proposed pFedBCC performs better than all comparison methods. The ablation study also confirms the contribution of SPLC and SCGC for unsupervised multi-type IHC image segmentation. This paper constructs a MT-IHC dataset containing more than 19,000 IHC images of 10 types (CgA, CK, Syn, CD, Ki67, P40, P53, EMA, TdT and BCL). Extensive experiments on the MT-IHC and public IHC datasets confirm that pFedBCC outperforms existing FL and DA methods.
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来源期刊
Computer methods and programs in biomedicine
Computer methods and programs in biomedicine 工程技术-工程:生物医学
CiteScore
12.30
自引率
6.60%
发文量
601
审稿时长
135 days
期刊介绍: To encourage the development of formal computing methods, and their application in biomedical research and medical practice, by illustration of fundamental principles in biomedical informatics research; to stimulate basic research into application software design; to report the state of research of biomedical information processing projects; to report new computer methodologies applied in biomedical areas; the eventual distribution of demonstrable software to avoid duplication of effort; to provide a forum for discussion and improvement of existing software; to optimize contact between national organizations and regional user groups by promoting an international exchange of information on formal methods, standards and software in biomedicine. Computer Methods and Programs in Biomedicine covers computing methodology and software systems derived from computing science for implementation in all aspects of biomedical research and medical practice. It is designed to serve: biochemists; biologists; geneticists; immunologists; neuroscientists; pharmacologists; toxicologists; clinicians; epidemiologists; psychiatrists; psychologists; cardiologists; chemists; (radio)physicists; computer scientists; programmers and systems analysts; biomedical, clinical, electrical and other engineers; teachers of medical informatics and users of educational software.
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