Immune cell profiles and predictive modeling in osteoporotic vertebral fractures using XGBoost machine learning algorithms.

IF 4 3区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Yi-Chou Chen, Hui-Chen Su, Shih-Ming Huang, Ching-Hsiao Yu, Jen-Huei Chang, Yi-Lin Chiu
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引用次数: 0

Abstract

Background: Osteoporosis significantly increases the risk of vertebral fractures, particularly among postmenopausal women, decreasing their quality of life. These fractures, often undiagnosed, can lead to severe health consequences and are influenced by bone mineral density and abnormal loads. Management strategies range from non-surgical interventions to surgical treatments. Moreover, the interaction between immune cells and bone cells plays a crucial role in bone repair processes, highlighting the importance of osteoimmunology in understanding and treating bone pathologies.

Methods: This study aims to investigate the xCell signature-based immune cell profiles in osteoporotic patients with and without vertebral fractures, utilizing advanced predictive modeling through the XGBoost algorithm.

Results: Our findings reveal an increased presence of CD4 + naïve T cells and central memory T cells in VF patients, indicating distinct adaptive immune responses. The XGBoost model identified Th1 cells, CD4 memory T cells, and hematopoietic stem cells as key predictors of VF. Notably, VF patients exhibited a reduction in Th1 cells and an enrichment of Th17 cells, which promote osteoclastogenesis and bone resorption. Gene expression analysis further highlighted an upregulation of osteoclast-related genes and a downregulation of osteoblast-related genes in VF patients, emphasizing the disrupted balance between bone formation and resorption. These findings underscore the critical role of immune cells in the pathogenesis of osteoporotic fractures and highlight the potential of XGBoost in identifying key biomarkers and therapeutic targets for mitigating fracture risk in osteoporotic patients.

利用 XGBoost 机器学习算法建立骨质疏松性脊椎骨折的免疫细胞图谱和预测模型。
背景:骨质疏松症显著增加椎体骨折的风险,尤其是绝经后妇女,降低她们的生活质量。这些骨折通常未确诊,可导致严重的健康后果,并受骨矿物质密度和异常负荷的影响。管理策略包括从非手术干预到手术治疗。此外,免疫细胞和骨细胞之间的相互作用在骨修复过程中起着至关重要的作用,突出了骨免疫学在理解和治疗骨病理方面的重要性。方法:本研究旨在利用XGBoost算法进行先进的预测建模,研究伴有和不伴有椎体骨折的骨质疏松症患者基于xCell特征的免疫细胞谱。结果:我们的研究结果显示,VF患者CD4 + naïve T细胞和中枢记忆T细胞的存在增加,表明明显的适应性免疫反应。XGBoost模型发现Th1细胞、CD4记忆T细胞和造血干细胞是VF的关键预测因子。值得注意的是,VF患者表现出Th1细胞的减少和Th17细胞的富集,Th17细胞促进破骨细胞的发生和骨吸收。基因表达分析进一步强调了VF患者中破骨细胞相关基因的上调和成骨细胞相关基因的下调,强调了骨形成和骨吸收之间的平衡被破坏。这些发现强调了免疫细胞在骨质疏松性骨折发病机制中的关键作用,并强调了XGBoost在确定骨质疏松症患者骨折风险的关键生物标志物和治疗靶点方面的潜力。
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来源期刊
Biodata Mining
Biodata Mining MATHEMATICAL & COMPUTATIONAL BIOLOGY-
CiteScore
7.90
自引率
0.00%
发文量
28
审稿时长
23 weeks
期刊介绍: BioData Mining is an open access, open peer-reviewed journal encompassing research on all aspects of data mining applied to high-dimensional biological and biomedical data, focusing on computational aspects of knowledge discovery from large-scale genetic, transcriptomic, genomic, proteomic, and metabolomic data. Topical areas include, but are not limited to: -Development, evaluation, and application of novel data mining and machine learning algorithms. -Adaptation, evaluation, and application of traditional data mining and machine learning algorithms. -Open-source software for the application of data mining and machine learning algorithms. -Design, development and integration of databases, software and web services for the storage, management, retrieval, and analysis of data from large scale studies. -Pre-processing, post-processing, modeling, and interpretation of data mining and machine learning results for biological interpretation and knowledge discovery.
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