Huiwen Yu , Kasper Green Larsen , Ove Christiansen
{"title":"Optimization methods for tensor decomposition: A comparison of new algorithms for fitting the CP(CANDECOMP/PARAFAC) model","authors":"Huiwen Yu , Kasper Green Larsen , Ove Christiansen","doi":"10.1016/j.chemolab.2024.105290","DOIUrl":null,"url":null,"abstract":"<div><div>Tensor decomposition is widely used for multi-way data analysis and computations in chemical science. CP decomposition is one of the most useful tensor decomposition models for capturing the essential information in massive multi-way chemical data and for efficiently performing computations with such tensors. However, efficiently and accurately computing the tensor decomposition itself is a nontrivial problem that sometimes limits the advantage of tensor decomposition methods. In this work we propose and test three new decomposition algorithms, that are defined from extrapolation ideas applied to the alternating least square (ALS) algorithm for CP tensor decomposition. The performance of the proposed algorithms are validated on both a variety of simulated datasets and real experimental datasets including fluorescence spectroscopy data, hyperspectral data and electroencephalogram (EEG) data. The results show that the proposed algorithms significantly accelerate the standard CP-ALS decomposition while maintaining favorable accuracy. One of the proposed methods, denoted direct inversion of the iterative subspace-like extrapolated ALS(CP-AD), is inspired from widely used extrapolation procedures used in the context of solving non-linear equations in quantum chemistry, and shows a particular attractive combination of a much reduced number of iterations needed for convergence, and modest computational cost. For example, CP-AD provided resulting tensors of similar accuracy but significantly lower computational cost than the standard CP-ALS algorithm and the widely used line-search based CP-ALS extrapolation procedure. The proposed methodology may thereby boost the application of tensor decomposition modeling in both experimental and computational chemistry.</div></div>","PeriodicalId":9774,"journal":{"name":"Chemometrics and Intelligent Laboratory Systems","volume":"257 ","pages":"Article 105290"},"PeriodicalIF":3.7000,"publicationDate":"2024-12-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Chemometrics and Intelligent Laboratory Systems","FirstCategoryId":"94","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0169743924002302","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"AUTOMATION & CONTROL SYSTEMS","Score":null,"Total":0}
引用次数: 0
Abstract
Tensor decomposition is widely used for multi-way data analysis and computations in chemical science. CP decomposition is one of the most useful tensor decomposition models for capturing the essential information in massive multi-way chemical data and for efficiently performing computations with such tensors. However, efficiently and accurately computing the tensor decomposition itself is a nontrivial problem that sometimes limits the advantage of tensor decomposition methods. In this work we propose and test three new decomposition algorithms, that are defined from extrapolation ideas applied to the alternating least square (ALS) algorithm for CP tensor decomposition. The performance of the proposed algorithms are validated on both a variety of simulated datasets and real experimental datasets including fluorescence spectroscopy data, hyperspectral data and electroencephalogram (EEG) data. The results show that the proposed algorithms significantly accelerate the standard CP-ALS decomposition while maintaining favorable accuracy. One of the proposed methods, denoted direct inversion of the iterative subspace-like extrapolated ALS(CP-AD), is inspired from widely used extrapolation procedures used in the context of solving non-linear equations in quantum chemistry, and shows a particular attractive combination of a much reduced number of iterations needed for convergence, and modest computational cost. For example, CP-AD provided resulting tensors of similar accuracy but significantly lower computational cost than the standard CP-ALS algorithm and the widely used line-search based CP-ALS extrapolation procedure. The proposed methodology may thereby boost the application of tensor decomposition modeling in both experimental and computational chemistry.
期刊介绍:
Chemometrics and Intelligent Laboratory Systems publishes original research papers, short communications, reviews, tutorials and Original Software Publications reporting on development of novel statistical, mathematical, or computer techniques in Chemistry and related disciplines.
Chemometrics is the chemical discipline that uses mathematical and statistical methods to design or select optimal procedures and experiments, and to provide maximum chemical information by analysing chemical data.
The journal deals with the following topics:
1) Development of new statistical, mathematical and chemometrical methods for Chemistry and related fields (Environmental Chemistry, Biochemistry, Toxicology, System Biology, -Omics, etc.)
2) Novel applications of chemometrics to all branches of Chemistry and related fields (typical domains of interest are: process data analysis, experimental design, data mining, signal processing, supervised modelling, decision making, robust statistics, mixture analysis, multivariate calibration etc.) Routine applications of established chemometrical techniques will not be considered.
3) Development of new software that provides novel tools or truly advances the use of chemometrical methods.
4) Well characterized data sets to test performance for the new methods and software.
The journal complies with International Committee of Medical Journal Editors'' Uniform requirements for manuscripts.