Deciphering the Importance of Weak CH…O and CH…π Interactions in S-Propyl (E)-2-(1,1-Dioxido-2-Propylbenzo[d]Isothiazol-3(2H)-ylidene)-1-Propylhydrazine-1-Carbothioate: An Experimental and Theoretical Approach
Muhammad Naeem Ahmed, Humaira Kashif, Muhammad Nawaz Tahir, Mohammad Shahidul Islam, Tahani Mazyad Almutairi, Mahmoud A. A. Ibrahim, Muhammad Adnan Bashir, Hiram Pérez, Diego M. Gil
{"title":"Deciphering the Importance of Weak CH…O and CH…π Interactions in S-Propyl (E)-2-(1,1-Dioxido-2-Propylbenzo[d]Isothiazol-3(2H)-ylidene)-1-Propylhydrazine-1-Carbothioate: An Experimental and Theoretical Approach","authors":"Muhammad Naeem Ahmed, Humaira Kashif, Muhammad Nawaz Tahir, Mohammad Shahidul Islam, Tahani Mazyad Almutairi, Mahmoud A. A. Ibrahim, Muhammad Adnan Bashir, Hiram Pérez, Diego M. Gil","doi":"10.1002/poc.4660","DOIUrl":null,"url":null,"abstract":"<div>\n \n <p>The title compound, C<sub>17</sub>H<sub>25</sub>N<sub>3</sub>O<sub>3</sub>S<sub>2</sub>, hereafter <b>1</b>, has been prepared and fully characterized by FTIR, <sup>1</sup>H NMR and <sup>13</sup>C NMR. Its crystal structure was determined by single-crystal X-ray diffraction. The crystal packing is stabilized by weak C<span></span>H···O and C<span></span>H···π interactions. The CLP-Pixel method was used to quantify the energetically significant molecular dimers. The intermolecular contacts were identified and quantified using Hirshfeld surfaces (HS) and the corresponding fingerprint plots. The main contributions to the HS of <b>1</b> come from H<span></span>H, O<span></span>H/H<span></span>O and C<span></span>H/H<span></span>C contacts, which cover about 93% of the total HS surface. The enrichment ratios showed that the favorable contacts accountable for the crystal packing are consistent with their contributions to the HS. Interaction region indicator (IRI) analysis was used to visualize the location and type of intermolecular contacts, allowing identify the C<span></span>H···O contacts as van der Waals interactions. To visualize the 3D topology of interactions in the crystal structure, interaction energy values were used to construct energy framework diagrams, which showed that the dispersion energy dominates over other interaction energies, as expected for crystal packing governed by weak interactions. Finally, a combination of MEP surface, QTAIM and NCIplot analysis energetically confirmed the existence of C<span></span>H···O and O···O dichalcogen interactions.</p>\n </div>","PeriodicalId":16829,"journal":{"name":"Journal of Physical Organic Chemistry","volume":"38 2","pages":""},"PeriodicalIF":1.9000,"publicationDate":"2024-09-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Physical Organic Chemistry","FirstCategoryId":"92","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/poc.4660","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, ORGANIC","Score":null,"Total":0}
引用次数: 0
Abstract
The title compound, C17H25N3O3S2, hereafter 1, has been prepared and fully characterized by FTIR, 1H NMR and 13C NMR. Its crystal structure was determined by single-crystal X-ray diffraction. The crystal packing is stabilized by weak CH···O and CH···π interactions. The CLP-Pixel method was used to quantify the energetically significant molecular dimers. The intermolecular contacts were identified and quantified using Hirshfeld surfaces (HS) and the corresponding fingerprint plots. The main contributions to the HS of 1 come from HH, OH/HO and CH/HC contacts, which cover about 93% of the total HS surface. The enrichment ratios showed that the favorable contacts accountable for the crystal packing are consistent with their contributions to the HS. Interaction region indicator (IRI) analysis was used to visualize the location and type of intermolecular contacts, allowing identify the CH···O contacts as van der Waals interactions. To visualize the 3D topology of interactions in the crystal structure, interaction energy values were used to construct energy framework diagrams, which showed that the dispersion energy dominates over other interaction energies, as expected for crystal packing governed by weak interactions. Finally, a combination of MEP surface, QTAIM and NCIplot analysis energetically confirmed the existence of CH···O and O···O dichalcogen interactions.
期刊介绍:
The Journal of Physical Organic Chemistry is the foremost international journal devoted to the relationship between molecular structure and chemical reactivity in organic systems. It publishes Research Articles, Reviews and Mini Reviews based on research striving to understand the principles governing chemical structures in relation to activity and transformation with physical and mathematical rigor, using results derived from experimental and computational methods. Physical Organic Chemistry is a central and fundamental field with multiple applications in fields such as molecular recognition, supramolecular chemistry, catalysis, photochemistry, biological and material sciences, nanotechnology and surface science.