Impact of Phosphorylation and O-GlcNAcylation on the Binding Affinity of R4 Tau Peptide to Microtubule and Its Conformational Preference upon Dissociation.

IF 5.3 2区 化学 Q1 CHEMISTRY, MEDICINAL
Sathish Dasari, Subha Kalyaanamoorthy
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引用次数: 0

Abstract

Tau is a microtubule (MT)-associated protein that binds to and stabilizes the MTs of neurons. Due to its intrinsically disordered nature, it undergoes several post-translational modifications (PTMs) that are intricately linked to both the physiological and pathophysiological roles of Tau. Prior research has shown phosphorylation and O-GlcNAcylation to have contrasting effects on Tau aggregation; however, the precise molecular mechanisms and potential synergistic effects of these modifications remain elusive. In this article, we study the impact of phosphorylation at S352, and S356, as well as the phosphorylation of O-GlcNAcylation at S356, individually and in combination, on the binding of the R4 (336-367) peptide with MTs by performing classical molecular dynamics (MD) simulations. By analyzing the binding free energies of the Tau-MT complex, we found that both individual and combined phosphorylation at S352 and S356 sites decreased the affinity of the R4 peptide toward MT. Surprisingly, O-GlcNAcylation, a likely neuroprotective modification, at S356 also decreased the binding affinity of Tau to MT similar to the single phosphorylation systems (pS352 or pS356) but was observed to maintain major interactions with MT comparable to unmodified R4. Additionally, we investigated the impact of phosphorylation at both sites and the interplay between phosphorylation at S352 and O-GlcNAcylation at S356, which showed that the latter preserved the interactions and affinity of the Tau with MT better than dual phosphorylation, though still not as effectively as single phosphorylation. These findings suggest that O-GlcNAcylation at residue S356 has a moderate destabilizing effect. We also performed replica-exchange MD simulations of the R4 peptide to understand the changes in conformational preferences upon phosphorylation, O-GlcNAcylation, and a combination of both modifications. Both individual and combined phosphorylation of R4 peptide at S352, and S356, sites induced salt-bridge interactions with positively charged side chains of lysine and arginine amino acids. However, O-GlcNAcylation at S356 induced secondary structural changes on the R4 peptide, leading to the formation of a β-sheet structure, consistent with previous experimental observations. Interestingly, simultaneous phosphorylation at S352 and the phosphorylation of O-GlcNAcylation at S356 resulted in conformations promoting salt-bridges and β-sheets. Thus, our study provides atomistic insights into the impact of PTMs on the binding of Tau peptide to MT and its conformational preferences upon dissociation.

磷酸化和o - glcn酰化对R4 Tau肽与微管结合亲和力的影响及其对解离的构象偏好。
Tau是一种微管相关蛋白,可以结合并稳定神经元的微管。由于其内在的无序性,它经历了一些与Tau的生理和病理生理作用复杂相关的翻译后修饰(PTMs)。先前的研究表明磷酸化和o - glcn酰化对Tau聚集有不同的影响;然而,这些修饰的精确分子机制和潜在的协同效应仍然难以捉摸。在本文中,我们通过经典分子动力学(MD)模拟研究了S352、S356位点磷酸化以及S356位点o - glcnac酰化磷酸化对R4(336-367)肽与MTs结合的影响。通过分析Tau-MT复合物的结合自由能,我们发现S352和S356位点的单独磷酸化和联合磷酸化都降低了R4肽对MT的亲和力。令人惊讶的是,S356位点的o - glcn酰化(一种可能的神经保护修饰)也降低了Tau对MT的结合亲和力,类似于单一磷酸化系统(pS352或pS356),但观察到与未修饰的R4相比,与MT保持了主要的相互作用。此外,我们研究了两个位点磷酸化的影响以及S352位点磷酸化和S356位点o - glcnac酰化之间的相互作用,结果表明后者比双磷酸化更好地保留了Tau与MT的相互作用和亲和力,尽管仍然不如单磷酸化有效。这些发现表明,o - glcn酰化残基S356具有中等的不稳定作用。我们还对R4肽进行了复制交换MD模拟,以了解在磷酸化、o - glcn酰化以及两种修饰组合时构象偏好的变化。R4肽在S352和S356位点的单独磷酸化和联合磷酸化都诱导了与赖氨酸和精氨酸氨基酸带正电侧链的盐桥相互作用。然而,在S356处的o - glcn酰化诱导了R4肽的二级结构变化,导致β-片结构的形成,与先前的实验观察结果一致。有趣的是,S352位点的同时磷酸化和S356位点的o - glcnac酰化磷酸化导致了促进盐桥和β-片的构象。因此,我们的研究为PTMs对Tau肽与MT结合的影响及其在解离时的构象偏好提供了原子性的见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
CiteScore
9.80
自引率
10.70%
发文量
529
审稿时长
1.4 months
期刊介绍: The Journal of Chemical Information and Modeling publishes papers reporting new methodology and/or important applications in the fields of chemical informatics and molecular modeling. Specific topics include the representation and computer-based searching of chemical databases, molecular modeling, computer-aided molecular design of new materials, catalysts, or ligands, development of new computational methods or efficient algorithms for chemical software, and biopharmaceutical chemistry including analyses of biological activity and other issues related to drug discovery. Astute chemists, computer scientists, and information specialists look to this monthly’s insightful research studies, programming innovations, and software reviews to keep current with advances in this integral, multidisciplinary field. As a subscriber you’ll stay abreast of database search systems, use of graph theory in chemical problems, substructure search systems, pattern recognition and clustering, analysis of chemical and physical data, molecular modeling, graphics and natural language interfaces, bibliometric and citation analysis, and synthesis design and reactions databases.
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