Substitution load revisited: a high proportion of deaths can be selective.

IF 3.3 3区 生物学 Q2 GENETICS & HEREDITY
Genetics Pub Date : 2025-04-17 DOI:10.1093/genetics/iyaf011
Joseph Matheson, Moises Exposito-Alonso, Joanna Masel
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引用次数: 0

Abstract

Haldane's Dilemma refers to the concern that the need for many "selective deaths" to complete a substitution (i.e. selective sweep) creates a speed limit to adaptation. However, discussion of this concern has been marked by confusion, especially with respect to the term "substitution load". Here, we distinguish different historical lines of reasoning, and identify one, focused on finite reproductive excess and the proportion of deaths that are "selective" (i.e. causally contribute to adaptive allele frequency changes), that has not yet been fully addressed. We develop this into a more general theoretical model that can apply to populations with any life history, even those for which a generation or even an individual are not well defined. The actual speed of adaptive evolution is coupled to the proportion of deaths that are selective. The degree to which reproductive excess enables a high proportion of selective deaths depends on the details of when selection takes place relative to density regulation, and there is therefore no general expression for a speed limit. To make these concepts concrete, we estimate both reproductive excess, and the proportion of deaths that are selective, from a dataset measuring survival of 517 different genotypes of Arabidopsis thaliana grown in 8 different environmental conditions. In this dataset, a much higher proportion of deaths contribute to adaptation, in all environmental conditions, than the 10% cap that was anticipated as substantially restricting adaptation during historical discussions of speed limits.

重新审视替代负荷:高比例的死亡可能是选择性的。
Haldane’s Dilemma指的是需要许多“选择性死亡”才能完成替换(即选择性清除),从而限制了适应的速度。然而,对这一问题的讨论却充满了混乱,特别是在“替代负荷”一词方面。在这里,我们区分了不同的历史推理路线,并确定了一个重点关注有限的生殖过剩和“选择性”死亡比例(即因果关系促成适应性等位基因频率变化),这尚未得到充分解决。我们将其发展成一个更普遍的理论模型,可以应用于任何生活史的种群,甚至是那些世代甚至个体都没有很好定义的种群。适应性进化的实际速度与选择性死亡的比例相关联。繁殖过剩在多大程度上造成了高比例的选择性死亡,这取决于相对于密度调节的选择何时发生的细节,因此没有关于速度限制的一般表述。为了使这些概念更加具体,我们从测量在8种不同环境条件下生长的517种不同基因型拟南芥的存活率的数据集中估计了生殖过剩和选择性死亡的比例。在本数据集中,在所有环境条件下,死亡对适应的贡献比例远远高于在历史上关于速度限制的讨论中预期的10%上限,因为这大大限制了适应。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Genetics
Genetics GENETICS & HEREDITY-
CiteScore
6.90
自引率
6.10%
发文量
177
审稿时长
1.5 months
期刊介绍: GENETICS is published by the Genetics Society of America, a scholarly society that seeks to deepen our understanding of the living world by advancing our understanding of genetics. Since 1916, GENETICS has published high-quality, original research presenting novel findings bearing on genetics and genomics. The journal publishes empirical studies of organisms ranging from microbes to humans, as well as theoretical work. While it has an illustrious history, GENETICS has changed along with the communities it serves: it is not your mentor''s journal. The editors make decisions quickly – in around 30 days – without sacrificing the excellence and scholarship for which the journal has long been known. GENETICS is a peer reviewed, peer-edited journal, with an international reach and increasing visibility and impact. All editorial decisions are made through collaboration of at least two editors who are practicing scientists. GENETICS is constantly innovating: expanded types of content include Reviews, Commentary (current issues of interest to geneticists), Perspectives (historical), Primers (to introduce primary literature into the classroom), Toolbox Reviews, plus YeastBook, FlyBook, and WormBook (coming spring 2016). For particularly time-sensitive results, we publish Communications. As part of our mission to serve our communities, we''ve published thematic collections, including Genomic Selection, Multiparental Populations, Mouse Collaborative Cross, and the Genetics of Sex.
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