Virtual screening: hope, hype, and the fine line in between.

IF 6 2区 医学 Q1 PHARMACOLOGY & PHARMACY
Expert Opinion on Drug Discovery Pub Date : 2025-02-01 Epub Date: 2025-01-27 DOI:10.1080/17460441.2025.2458666
Hossam Nada, Nicholas A Meanwell, Moustafa T Gabr
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引用次数: 0

Abstract

Introduction: Technological advancements in virtual screening (VS) have rapidly accelerated its application in drug discovery, as reflected by the exponential growth in VS-related publications. However, a significant gap remains between the volume of computational predictions and their experimental validation. This discrepancy has led to a rise in the number of unverified 'claimed' hits which impedes the drug discovery efforts.

Areas covered: This perspective examines the current VS landscape, highlighting essential practices and identifying critical challenges, limitations, and common pitfalls. Using case studies and practices, this perspective aims to highlight strategies that can effectively mitigate or overcome these challenges. Furthermore, the perspective explores common approaches for addressing pharmacodynamic and pharmacokinetic issues in optimizing VS hits.

Expert opinion: VS has become a tried-and-true technique of drug discovery due to the rapid advances in computational methods and machine learning (ML) over the past two decades. Although each VS workflow varies depending on the chosen approach and methodology, integrated strategies that combine biological and in silico data have consistently yielded higher success rates. Moreover, the widespread adoption of ML has enhanced the integration of VS into the drug discovery pipeline. However, the absence of standardized evaluation criteria hinders the objective assessment of VS studies' success and the identification of optimal adoption methods.

虚拟放映:希望,炒作,以及两者之间的微妙界限。
导读:虚拟筛选(VS)的技术进步迅速加速了其在药物发现中的应用,这反映在VS相关出版物的指数增长上。然而,在计算预测的数量和它们的实验验证之间仍然存在显著的差距。这种差异导致了未经证实的“声称”成功药物数量的增加,这阻碍了药物发现的努力。涵盖的领域:这个视角考察了当前的虚拟现实环境,强调了基本的实践,并确定了关键的挑战、限制和常见的陷阱。通过案例研究和实践,本观点旨在强调能够有效减轻或克服这些挑战的策略。此外,该观点探讨了在优化VS命中时解决药效学和药代动力学问题的常用方法。专家意见:由于过去二十年来计算方法和机器学习(ML)的快速发展,VS已经成为一种可靠的药物发现技术。尽管每个VS工作流程根据所选择的方法和方法而有所不同,但结合生物和计算机数据的综合策略始终产生更高的成功率。此外,ML的广泛采用增强了VS与药物发现管道的整合。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
CiteScore
10.20
自引率
1.60%
发文量
78
审稿时长
6-12 weeks
期刊介绍: Expert Opinion on Drug Discovery (ISSN 1746-0441 [print], 1746-045X [electronic]) is a MEDLINE-indexed, peer-reviewed, international journal publishing review articles on novel technologies involved in the drug discovery process, leading to new leads and reduced attrition rates. Each article is structured to incorporate the author’s own expert opinion on the scope for future development. The Editors welcome: Reviews covering chemoinformatics; bioinformatics; assay development; novel screening technologies; in vitro/in vivo models; structure-based drug design; systems biology Drug Case Histories examining the steps involved in the preclinical and clinical development of a particular drug The audience consists of scientists and managers in the healthcare and pharmaceutical industry, academic pharmaceutical scientists and other closely related professionals looking to enhance the success of their drug candidates through optimisation at the preclinical level.
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