{"title":"IR Fingerprint of the Intermolecular Hydrogen Bond on Amino Acids and Its Relevance to Chaperone Activity of αB-Crystallin.","authors":"Guohong Liao, Meixia Ruan, Yingjie Wang, Hailong Chen, Yuxiang Weng","doi":"10.1021/acs.jpcb.4c07865","DOIUrl":null,"url":null,"abstract":"<p><p>Intermolecular hydrogen bonds between carboxyl (COO<sup>-</sup>) and amino groups are a common weak interaction in proteins. Infrared (IR) spectral assignment of such an intermolecular hydrogen bond provides a fingerprint for studying protein-protein interactions as its absorption frequency is affected by the molecular electrostatic environment. Temperature-dependent FTIR and temperature-jump time-resolved IR absorbance difference spectra of several typical amino acids and those of wild type and single-site mutated αB-crystallin were performed. It was found that the antisymmetric vibrational frequency of the COO<sup>-</sup> groups in amino acids decreases from approximately 1626 to 1610 cm<sup>-1</sup> upon the formation of intermolecular hydrogen bonds, which was further supported by DFT calculations, while the IR frequency of the intermolecular hydrogen bonds on the formation of intermolecular hydrogen bonds, which was further supported by DFT calculations, while the IR frequency of the intermolecular hydrogen bonded COO<sup>-</sup> groups at the αB-crystallin dimeric interface was also observed around 1610 cm<sup>-1</sup>. With this spectral label, the active site of αB-crystallin, a heat shock molecular chaperone against the UV-light-damaged γD-crystallin was investigated. The active site was found to be localized at an arch loop structure connecting the two β-strands locked by intermolecular hydrogen bonds at the dimeric interface. It is the liberated arch loop after breaking of the intermolecular hydrogen bond locks that binds the damaged γD-crystallin, leading to the observed chaperone-like activity of αB-crystallin.</p>","PeriodicalId":60,"journal":{"name":"The Journal of Physical Chemistry B","volume":" ","pages":"1237-1247"},"PeriodicalIF":2.8000,"publicationDate":"2025-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"The Journal of Physical Chemistry B","FirstCategoryId":"1","ListUrlMain":"https://doi.org/10.1021/acs.jpcb.4c07865","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/21 0:00:00","PubModel":"Epub","JCR":"Q3","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0
Abstract
Intermolecular hydrogen bonds between carboxyl (COO-) and amino groups are a common weak interaction in proteins. Infrared (IR) spectral assignment of such an intermolecular hydrogen bond provides a fingerprint for studying protein-protein interactions as its absorption frequency is affected by the molecular electrostatic environment. Temperature-dependent FTIR and temperature-jump time-resolved IR absorbance difference spectra of several typical amino acids and those of wild type and single-site mutated αB-crystallin were performed. It was found that the antisymmetric vibrational frequency of the COO- groups in amino acids decreases from approximately 1626 to 1610 cm-1 upon the formation of intermolecular hydrogen bonds, which was further supported by DFT calculations, while the IR frequency of the intermolecular hydrogen bonds on the formation of intermolecular hydrogen bonds, which was further supported by DFT calculations, while the IR frequency of the intermolecular hydrogen bonded COO- groups at the αB-crystallin dimeric interface was also observed around 1610 cm-1. With this spectral label, the active site of αB-crystallin, a heat shock molecular chaperone against the UV-light-damaged γD-crystallin was investigated. The active site was found to be localized at an arch loop structure connecting the two β-strands locked by intermolecular hydrogen bonds at the dimeric interface. It is the liberated arch loop after breaking of the intermolecular hydrogen bond locks that binds the damaged γD-crystallin, leading to the observed chaperone-like activity of αB-crystallin.
羧基(COO-)和氨基之间的分子间氢键是蛋白质中常见的弱相互作用。这种分子间氢键的红外光谱分配为研究蛋白质-蛋白质相互作用提供了指纹,因为它的吸收频率受分子静电环境的影响。研究了几种典型氨基酸、野生型α b -晶体蛋白和单位点突变α b -晶体蛋白的温度依赖性红外光谱和温度跳变时间分辨红外光谱。发现氨基酸中COO-基团的反对称振动频率在分子间氢键形成时从大约1626 cm-1降低到1610 cm-1, DFT计算进一步支持了这一结论,而分子间氢键形成时分子间氢键的IR频率也得到了DFT计算的进一步支持。α b -结晶蛋白二聚体界面处的分子间氢键COO-基团在1610 cm-1附近也有红外频率。利用这一光谱标记,研究了α b -晶体蛋白的活性位点,α b -晶体蛋白是一种对抗紫外线损伤的γ d -晶体蛋白的热休克分子伴侣。活性位点被发现定位在一个拱形环结构上,连接由分子间氢键锁在二聚体界面上的两条β链。正是分子间氢键锁断裂后释放出的拱形环结合了受损的γ - d -晶体蛋白,导致α - b -晶体蛋白具有类似伴侣蛋白的活性。
期刊介绍:
An essential criterion for acceptance of research articles in the journal is that they provide new physical insight. Please refer to the New Physical Insights virtual issue on what constitutes new physical insight. Manuscripts that are essentially reporting data or applications of data are, in general, not suitable for publication in JPC B.