A comprehensive study of the influence of non-covalent interactions on electron density redistribution during the reaction between acetic acid and methylamine

IF 2.1 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Olivier Aroule, Emilie-Laure Zins
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引用次数: 0

Abstract

Context

A chemical reaction can be described, from a physicochemical perspective, as a redistribution of electron density. Additionally, non-covalent interactions locally modify the electron density distribution. This study aims to characterize the modification of reactivity caused by the presence of non-covalent interactions such as hydrogen bonds, in a reaction involving the formation of two bonds and the breaking of two others: CH₃COOH + NH₂CH₃ → CH₃CONHCH₃.

Methods

In this work, we will follow the how a reaction mechanism involving the formation of two chemical bonds and the breaking of two other chemical bonds is affected by non-covalent interaction. To this end, the reaction force will be used to define the region of the reagents, the region of the transition state, and the region of the products. We will analyze the redistributions of electron density and electron pairs in each of the regions of the reaction mechanisms, using QTAIM and ELF, topological analyses, respectively, for the reaction between methylamine and acetic acid, in the presence of 0 to 4 water molecules. DFT calculations were carried out at the LC-ωPBE/6–311 + + G(d,p) + GD3BJ level along the intrinsic reaction coordinate of the one-step reaction leading to the formation of methylacetamide.

Abstract Image

醋酸与甲胺反应过程中非共价相互作用对电子密度重分布影响的综合研究
从物理化学的角度来看,化学反应可以被描述为电子密度的重新分配。此外,非共价相互作用局部改变了电子密度分布。这项研究的目的是表征由非共价相互作用(如氢键)的存在引起的反应性的修饰,在一个涉及两个键的形成和两个键的断裂的反应中:CH₃COOH + NH₂CH₃→CH₃CONHCH₃。方法在这项工作中,我们将关注非共价相互作用如何影响两个化学键的形成和另外两个化学键的断裂的反应机制。为此,反应力将用于确定试剂的区域、过渡态的区域和生成物的区域。在0 ~ 4个水分子存在的情况下,我们将分别使用QTAIM和ELF拓扑分析,分析甲胺和乙酸反应中每个区域的电子密度和电子对的重新分布。沿着一步反应生成甲乙酰胺的固有反应坐标,在LC-ωPBE/ 6-311 + + G(d,p) + GD3BJ水平上进行DFT计算。
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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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