{"title":"Molecular structure characteristic of coals of different rank","authors":"Xiulin Shang, Zhongqi Wei, Di Tang, Zhijun Zhang","doi":"10.1007/s00894-024-06272-w","DOIUrl":null,"url":null,"abstract":"<div><h3>Context</h3><p>Understanding the structural characteristics of coal at the molecular level is fundamental for its effective utilization. To explore the molecular structure characteristic, the long-flame coal from Daliuta (DLT), coking coal from Yaoqiao (YQ), and anthracite from Taixi (TX) were investigated using various techniques such as elemental analysis, Fourier transform infrared spectroscopy, solid-state <sup>13</sup>C nuclear magnetic resonance spectroscopy, and X-ray photoelectron spectroscopy. Based on the structural parameters, the coal molecular model was constructed and optimized. The molecular formula of DLT was C<sub>193</sub>H<sub>178</sub>N<sub>2</sub>O<sub>47</sub>, that of YQ was C<sub>201</sub>H<sub>179</sub>N<sub>3</sub>O<sub>30</sub>S, and that of TX was C<sub>198</sub>H<sub>118</sub>N<sub>2</sub>O<sub>10</sub>. With an increase in the degree of metamorphism, the substitution of the benzene ring gradually shifted towards lower levels of substitution. The content of long chain in the aliphatic chain decreased while the content of branched chains kept increasing. The percentage of aromatic ether increased gradually, while the phenolic hydroxyl group initially decreased but then increased. The carboxyl group C = O decreased and eventually disappeared in anthracite coal. The proportion of pyrrole nitrogen gradually increased while that of pyridine nitrogen and protonated pyridine gradually decreased.</p><h3>Methods</h3><p>The 2D planar structure of coal was constructed using ChemDraw, ACD/CNMR Predictor, and gNMR programs. The geometry optimization was performed using the COMPASS II force field within the Forcite module in Materials Studio 2020. The annealing process employed NVT ensemble at a simulation temperature of 298 K. The Amorphous Cell module in Materials Studio was used to construct large-scale 3D molecular models, with the set parameters in this paper.</p></div>","PeriodicalId":651,"journal":{"name":"Journal of Molecular Modeling","volume":"31 2","pages":""},"PeriodicalIF":2.1000,"publicationDate":"2025-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Modeling","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1007/s00894-024-06272-w","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Context
Understanding the structural characteristics of coal at the molecular level is fundamental for its effective utilization. To explore the molecular structure characteristic, the long-flame coal from Daliuta (DLT), coking coal from Yaoqiao (YQ), and anthracite from Taixi (TX) were investigated using various techniques such as elemental analysis, Fourier transform infrared spectroscopy, solid-state 13C nuclear magnetic resonance spectroscopy, and X-ray photoelectron spectroscopy. Based on the structural parameters, the coal molecular model was constructed and optimized. The molecular formula of DLT was C193H178N2O47, that of YQ was C201H179N3O30S, and that of TX was C198H118N2O10. With an increase in the degree of metamorphism, the substitution of the benzene ring gradually shifted towards lower levels of substitution. The content of long chain in the aliphatic chain decreased while the content of branched chains kept increasing. The percentage of aromatic ether increased gradually, while the phenolic hydroxyl group initially decreased but then increased. The carboxyl group C = O decreased and eventually disappeared in anthracite coal. The proportion of pyrrole nitrogen gradually increased while that of pyridine nitrogen and protonated pyridine gradually decreased.
Methods
The 2D planar structure of coal was constructed using ChemDraw, ACD/CNMR Predictor, and gNMR programs. The geometry optimization was performed using the COMPASS II force field within the Forcite module in Materials Studio 2020. The annealing process employed NVT ensemble at a simulation temperature of 298 K. The Amorphous Cell module in Materials Studio was used to construct large-scale 3D molecular models, with the set parameters in this paper.
期刊介绍:
The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling.
Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry.
Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.