Towards a unified fold-cusp model for bond polarity scaling: electron rearrangements in the pyrolytic isomerization of cubane to cyclooctatetraene

IF 2.1 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Leandro Ayarde-Henríquez, Cristian Guerra, Patricia Pérez, Eduardo Chamorro
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Abstract

Context

This study meticulously examines the criteria for assigning electron rearrangements along the intrinsic reaction coordinate (IRC) leading to bond formation and breaking processes during the pyrolytic isomerization of cubane (CUB) to 1,3,5,7-cyclooctatetraene (COT) from both thermochemical and bonding perspectives. Notably, no cusp-type function was detected in the initial thermal conversion step of CUB to bicyclo[4.2.0]octa-2,4,7-triene (BOT). Contrary to previous reports, all relevant fluxes of the pairing density must be described in terms of fold unfolding. The transannular ring opening in the second step highlights characteristics indicative of a cusp-type catastrophe, facilitating a direct comparison with fold features. This fact underscores the critical role of density symmetry persistence near topographical events in determining the type of bifurcation. A fold-cusp unified model for scaling the polarity of chemical bonds is proposed, integrating ubiquitous reaction classes such as isomerization, bimolecular nucleophilic substitution, and cycloaddition. The analysis reveals that bond polarity index (BPI) values within the [0, 10−5] au interval correlate with cusp unfolding, whereas fold spans over a broader [10−3, ∞) au spectrum. These insights emphasize that the cusp polynomial is suitable for describing chemical processes involving symmetric electron density distributions, particularly those involving homolytic bond cleavages; in contrast, fold characterizes most chemical events.

Methods

Geometry optimization and frequency calculations were conducted using various DFT functionals. In line with recent findings concerning the rigorous application of BET, the characterization of bond formations and scissions via unfoldings was carried out by carefully monitoring the determinant of the Hessian matrix at all potentially degenerate CPs and their relative distance. The computed gas-phase activation enthalpies strongly align with experimental values, stressing the adequacy of the chosen levels of theory in describing the ELF topography along the IRC. The BPI was determined using the methodology proposed by Allen and collaborators.

Abstract Image

键极性缩放的统一折尖模型:立方烷裂解异构化成环四烯过程中的电子重排
本研究从热化学和键的角度仔细研究了在立方烷(CUB)与1,3,5,7-环四烯(COT)的热解异构化过程中,沿着本然反应坐标(IRC)分配电子重排导致键形成和断裂过程的标准。值得注意的是,在CUB转化为双[4.2.0]八-2,4,7-三烯(BOT)的初始热转化步骤中没有检测到尖型函数。与以前的报道相反,配对密度的所有相关通量必须用褶皱展开来描述。第二步的跨环形开口突出了尖型突变的特征,便于与褶皱特征进行直接比较。这一事实强调了地形事件附近的密度对称持久性在确定分岔类型方面的关键作用。提出了一个折叠尖头统一模型,用于缩放化学键的极性,整合普遍存在的反应类别,如异构化,双分子亲核取代,和环加成。分析表明,键极性指数(BPI)值在[0,10−5]au区间内与尖端展开相关,而褶皱跨越更宽的[10−3,∞]au谱。这些见解强调尖峰多项式适用于描述涉及对称电子密度分布的化学过程,特别是涉及均溶键劈裂的化学过程;相反,折叠是大多数化学事件的特征。方法利用各种DFT泛函进行几何优化和频率计算。根据最近关于BET严格应用的研究结果,通过仔细监测所有潜在退化cp的Hessian矩阵的行列式及其相对距离,通过展开来表征键形成和剪切。计算的气相激活焓与实验值高度一致,强调了所选理论水平在描述沿IRC的ELF地形时的充分性。BPI是使用Allen及其合作者提出的方法确定的。
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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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