Crystal structures of (±)-(1SR,5SR,6SR,7SR,10SR,11SR,13RS,14SR,15SR,16RS)-13-acetoxy-16-benzyloxy-15-hydroxy-7-methoxymethoxy-3-oxo-11,15,18,18-tetramethyl-2,4-dioxatetracyclo[12.3.1.01,5.06,11]octadecan-10-yl benzoate and its 13-epimer
{"title":"Crystal structures of (±)-(1SR,5SR,6SR,7SR,10SR,11SR,13RS,14SR,15SR,16RS)-13-acetoxy-16-benzyloxy-15-hydroxy-7-methoxymethoxy-3-oxo-11,15,18,18-tetramethyl-2,4-dioxatetracyclo[12.3.1.01,5.06,11]octadecan-10-yl benzoate and its 13-epimer","authors":"Takeshi Oishi , Keisuke Fukaya , Takaaki Sato , Noritaka Chida","doi":"10.1107/S2056989024012234","DOIUrl":null,"url":null,"abstract":"<div><div>The crystal structures of a fused tetracyclic benzoate and its epimer obtained in synthetic study of Paclitaxel are described. The corresponding ring conformations in both tetracycles are similar; however, one epimer shows two orientational disorders and while none occurs for the other. In each crystal, pairs of intermolecular O—H⋯O hydrogen bonds connect the molecules into inversion dimers. The dimers are further linked by weak intermolecular C—H⋯O and/or C—H⋯π interactions.</div></div><div><div>The title compounds, C<sub>38</sub>H<sub>48</sub>O<sub>11</sub> (<strong>A</strong> and <strong>B</strong>), are tetracyclic benzoates composed of a taxane ring with a fused dioxolane ring as the core skeleton. In compound <strong>A</strong>, the five-membered dioxolane ring is essentially planar while the two cyclohexane rings and the cyclooctane ring adopt chair and chair–chair forms, respectively, and there are three intramolecular H⋯H short contacts. The corresponding ring conformations in <strong>B</strong> are similar; however, one intramolecular C—H⋯O interaction and two H⋯H short contacts are observed, and the benzoyl and methoxymethyl groups show orientational disorder. In the crystal of <strong>A</strong>, a pair of intermolecular O—H⋯O hydrogen bonds link two molecules into an inversion dimer, and weak intermolecular C—H⋯O interactions connect the dimers, forming a three-dimensional network. In the crystal of <strong>B</strong>, an inversion dimer is similarly generated by a pair of intermolecular O—H⋯O hydrogen bonds, and weak intermolecular C—H⋯O and C—H⋯π interactions connect the dimers into a three-dimensional architecture.</div></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"81 1","pages":"Pages 74-79"},"PeriodicalIF":0.5000,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11701762/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Acta Crystallographica Section E: Crystallographic Communications","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/org/science/article/pii/S2056989025000155","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"CRYSTALLOGRAPHY","Score":null,"Total":0}
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Abstract
The crystal structures of a fused tetracyclic benzoate and its epimer obtained in synthetic study of Paclitaxel are described. The corresponding ring conformations in both tetracycles are similar; however, one epimer shows two orientational disorders and while none occurs for the other. In each crystal, pairs of intermolecular O—H⋯O hydrogen bonds connect the molecules into inversion dimers. The dimers are further linked by weak intermolecular C—H⋯O and/or C—H⋯π interactions.
The title compounds, C38H48O11 (A and B), are tetracyclic benzoates composed of a taxane ring with a fused dioxolane ring as the core skeleton. In compound A, the five-membered dioxolane ring is essentially planar while the two cyclohexane rings and the cyclooctane ring adopt chair and chair–chair forms, respectively, and there are three intramolecular H⋯H short contacts. The corresponding ring conformations in B are similar; however, one intramolecular C—H⋯O interaction and two H⋯H short contacts are observed, and the benzoyl and methoxymethyl groups show orientational disorder. In the crystal of A, a pair of intermolecular O—H⋯O hydrogen bonds link two molecules into an inversion dimer, and weak intermolecular C—H⋯O interactions connect the dimers, forming a three-dimensional network. In the crystal of B, an inversion dimer is similarly generated by a pair of intermolecular O—H⋯O hydrogen bonds, and weak intermolecular C—H⋯O and C—H⋯π interactions connect the dimers into a three-dimensional architecture.
期刊介绍:
Acta Crystallographica Section E: Crystallographic Communications is the IUCr''s open-access structural communications journal. It provides a fast, simple and easily accessible publication mechanism for crystal structure determinations of inorganic, metal-organic and organic compounds. The electronic submission, validation, refereeing and publication facilities of the journal ensure rapid and high-quality publication of fully validated structures. The primary article category is Research Communications; these are peer-reviewed articles describing one or more structure determinations with appropriate discussion of the science.