{"title":"Genome-wide identification and expression analysis of the BAHD gene family in <i>Leonurus japonicus</i>.","authors":"Qing Wang, Tongtong Guo, Yuxiao Yi, Jiaxin Zhang, Wenhan Lv, Fengtang Yang, Jianing Xu","doi":"10.3389/fgene.2024.1512692","DOIUrl":null,"url":null,"abstract":"<p><p>Acylation represents a pivotal biochemical process that is instrumental in the modification of secondary metabolites throughout the growth and developmental stages of plants. The BAHD acyltransferase family within the plant kingdom predominantly utilizes coenzyme A thioester as the acyl donor, while employing alcohol or amine compounds as the acceptor substrates to facilitate acylation reactions. Using bioinformatics approaches, the <i>LjBAHD</i> gene family members in the genome of <i>Leonurus japonicus</i> (<i>L. japonicus</i>) were identified and characterized including gene structure, conserved motifs, <i>cis</i>-acting elements, and potential gene functions. To elucidate the roles of BAHD genes in various tissues of <i>L. japonicus</i>, the expression profiles of <i>LjBAHD</i> family members across different organs were scrutinized. Under drought stress treatment, some <i>LjBAHDs</i> were upregulation, suggesting their potential involvement in drought response. Notably, a detailed study was conducted on a specific HCT gene (i.e., <i>LjBAHD</i>25) within the BAHD gene family. Analysis of its expression patterns suggested a role for <i>LjBAHD</i>25 in the phenylpropanoid metabolism pathway in <i>L. japonicus</i>, contributing to the biosynthesis of secondary metabolites with unique bioactivity. The findings of this study have established a scientific foundation for the subsequent development and functional validation of the BAHD gene family in <i>L. japonicus.</i></p>","PeriodicalId":12750,"journal":{"name":"Frontiers in Genetics","volume":"15 ","pages":"1512692"},"PeriodicalIF":2.8000,"publicationDate":"2024-12-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11693612/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Frontiers in Genetics","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.3389/fgene.2024.1512692","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/1 0:00:00","PubModel":"eCollection","JCR":"Q2","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
引用次数: 0
Abstract
Acylation represents a pivotal biochemical process that is instrumental in the modification of secondary metabolites throughout the growth and developmental stages of plants. The BAHD acyltransferase family within the plant kingdom predominantly utilizes coenzyme A thioester as the acyl donor, while employing alcohol or amine compounds as the acceptor substrates to facilitate acylation reactions. Using bioinformatics approaches, the LjBAHD gene family members in the genome of Leonurus japonicus (L. japonicus) were identified and characterized including gene structure, conserved motifs, cis-acting elements, and potential gene functions. To elucidate the roles of BAHD genes in various tissues of L. japonicus, the expression profiles of LjBAHD family members across different organs were scrutinized. Under drought stress treatment, some LjBAHDs were upregulation, suggesting their potential involvement in drought response. Notably, a detailed study was conducted on a specific HCT gene (i.e., LjBAHD25) within the BAHD gene family. Analysis of its expression patterns suggested a role for LjBAHD25 in the phenylpropanoid metabolism pathway in L. japonicus, contributing to the biosynthesis of secondary metabolites with unique bioactivity. The findings of this study have established a scientific foundation for the subsequent development and functional validation of the BAHD gene family in L. japonicus.
Frontiers in GeneticsBiochemistry, Genetics and Molecular Biology-Molecular Medicine
CiteScore
5.50
自引率
8.10%
发文量
3491
审稿时长
14 weeks
期刊介绍:
Frontiers in Genetics publishes rigorously peer-reviewed research on genes and genomes relating to all the domains of life, from humans to plants to livestock and other model organisms. Led by an outstanding Editorial Board of the world’s leading experts, this multidisciplinary, open-access journal is at the forefront of communicating cutting-edge research to researchers, academics, clinicians, policy makers and the public.
The study of inheritance and the impact of the genome on various biological processes is well documented. However, the majority of discoveries are still to come. A new era is seeing major developments in the function and variability of the genome, the use of genetic and genomic tools and the analysis of the genetic basis of various biological phenomena.