Genome-wide identification and expression analysis of the BAHD gene family in Leonurus japonicus.

IF 2.8 3区 生物学 Q2 GENETICS & HEREDITY
Frontiers in Genetics Pub Date : 2024-12-19 eCollection Date: 2024-01-01 DOI:10.3389/fgene.2024.1512692
Qing Wang, Tongtong Guo, Yuxiao Yi, Jiaxin Zhang, Wenhan Lv, Fengtang Yang, Jianing Xu
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引用次数: 0

Abstract

Acylation represents a pivotal biochemical process that is instrumental in the modification of secondary metabolites throughout the growth and developmental stages of plants. The BAHD acyltransferase family within the plant kingdom predominantly utilizes coenzyme A thioester as the acyl donor, while employing alcohol or amine compounds as the acceptor substrates to facilitate acylation reactions. Using bioinformatics approaches, the LjBAHD gene family members in the genome of Leonurus japonicus (L. japonicus) were identified and characterized including gene structure, conserved motifs, cis-acting elements, and potential gene functions. To elucidate the roles of BAHD genes in various tissues of L. japonicus, the expression profiles of LjBAHD family members across different organs were scrutinized. Under drought stress treatment, some LjBAHDs were upregulation, suggesting their potential involvement in drought response. Notably, a detailed study was conducted on a specific HCT gene (i.e., LjBAHD25) within the BAHD gene family. Analysis of its expression patterns suggested a role for LjBAHD25 in the phenylpropanoid metabolism pathway in L. japonicus, contributing to the biosynthesis of secondary metabolites with unique bioactivity. The findings of this study have established a scientific foundation for the subsequent development and functional validation of the BAHD gene family in L. japonicus.

益母草BAHD基因家族的全基因组鉴定及表达分析。
酰化是一个关键的生化过程,在植物的整个生长和发育阶段对次级代谢产物的修饰起着重要作用。植物界的 BAHD 乙酰基转移酶家族主要利用辅酶 A 硫酯作为乙酰基供体,同时利用醇或胺化合物作为受体底物来促进乙酰化反应。利用生物信息学方法,对日本绣线菊(Leonurus japonicus)基因组中的 LjBAHD 基因家族成员进行了鉴定和表征,包括基因结构、保守基序、顺式作用元件和潜在的基因功能。为了阐明BAHD基因在日本莴苣不同组织中的作用,研究人员仔细观察了LjBAHD家族成员在不同器官中的表达谱。在干旱胁迫处理下,一些LjBAHD基因上调,表明它们可能参与了干旱响应。值得注意的是,研究人员对 BAHD 基因家族中一个特定的 HCT 基因(即 LjBAHD25)进行了详细研究。对其表达模式的分析表明,LjBAHD25 在日本莴苣的苯丙类代谢途径中发挥作用,促进了具有独特生物活性的次生代谢物的生物合成。该研究结果为日本鹅膏蕈 BAHD 基因家族的后续发展和功能验证奠定了科学基础。
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来源期刊
Frontiers in Genetics
Frontiers in Genetics Biochemistry, Genetics and Molecular Biology-Molecular Medicine
CiteScore
5.50
自引率
8.10%
发文量
3491
审稿时长
14 weeks
期刊介绍: Frontiers in Genetics publishes rigorously peer-reviewed research on genes and genomes relating to all the domains of life, from humans to plants to livestock and other model organisms. Led by an outstanding Editorial Board of the world’s leading experts, this multidisciplinary, open-access journal is at the forefront of communicating cutting-edge research to researchers, academics, clinicians, policy makers and the public. The study of inheritance and the impact of the genome on various biological processes is well documented. However, the majority of discoveries are still to come. A new era is seeing major developments in the function and variability of the genome, the use of genetic and genomic tools and the analysis of the genetic basis of various biological phenomena.
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