Similar but Distinct-Biochemical Characterization of the Staphylococcus aureus Serine Hydrolases FphH and FphI.

IF 3.2 4区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Matthias Fellner, George Randall, Ianah R C G Bitac, Annmaree K Warrender, Ashish Sethi, Raz Jelinek, Itamar Kass
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引用次数: 0

Abstract

Staphylococcus aureus is a major cause of infections like bacteremia, pneumonia, and endocarditis. These infections are often linked to the ability of S. aureus to form biofilms. Several S. aureus serine hydrolases have previously been identified to be active during biofilm-forming conditions. Here, we present the biochemical characterization of two of these enzymes-fluorophosphonate binding hydrolase H and I (FphH, FphI). Cryogenic and room-temperature X-ray crystallography, enzymatic substrate profiling, small-angle X-ray scattering analysis, and molecular dynamics simulations provide new insights into similarities and differences between these two hydrolase_4 domain family members. We discover that these enzymes share an overall fold, including a flexible lid or cap region above the active site, which can be seen to be mobile in solution. Differences in the active site pocket and lid residues differentiate them and explain speed differences in their carboxyesterase substrate profile toward small unbranched carbon chain ester molecules. The first analysis of FphI is also compared to our previous knowledge of FphH and its association to stress conditions. These results enable the future precise targeting of Fph serine hydrolase family members with a long-term goal to significantly improve the health and wellbeing of individuals and populations worldwide.

金黄色葡萄球菌丝氨酸水解酶FphH和FphI相似但不同的生化特性
金黄色葡萄球菌是引起菌血症、肺炎和心内膜炎等感染的主要原因。这些感染通常与金黄色葡萄球菌形成生物膜的能力有关。一些金黄色葡萄球菌丝氨酸水解酶在生物膜形成的条件下被确定是活跃的。在这里,我们提出了这两种酶-氟膦酸结合水解酶H和I (FphH, FphI)的生化表征。低温和室温x射线晶体学,酶底物分析,小角度x射线散射分析和分子动力学模拟为这两个氢lase_4结构域家族成员之间的异同提供了新的见解。我们发现这些酶共享一个整体折叠,包括活性位点上方的柔性盖子或帽区,可以看到在溶液中是可移动的。活性位点口袋和盖子残基的差异区分了它们,并解释了它们的羧酶底物对小的未支链碳链酯分子的速度差异。对FphI的第一次分析也与我们之前对FphH及其与应力条件的关系的了解进行了比较。这些结果使Fph丝氨酸水解酶家族成员的精确靶向成为可能,其长期目标是显著改善全世界个人和人群的健康和福祉。
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来源期刊
Proteins-Structure Function and Bioinformatics
Proteins-Structure Function and Bioinformatics 生物-生化与分子生物学
CiteScore
5.90
自引率
3.40%
发文量
172
审稿时长
3 months
期刊介绍: PROTEINS : Structure, Function, and Bioinformatics publishes original reports of significant experimental and analytic research in all areas of protein research: structure, function, computation, genetics, and design. The journal encourages reports that present new experimental or computational approaches for interpreting and understanding data from biophysical chemistry, structural studies of proteins and macromolecular assemblies, alterations of protein structure and function engineered through techniques of molecular biology and genetics, functional analyses under physiologic conditions, as well as the interactions of proteins with receptors, nucleic acids, or other specific ligands or substrates. Research in protein and peptide biochemistry directed toward synthesizing or characterizing molecules that simulate aspects of the activity of proteins, or that act as inhibitors of protein function, is also within the scope of PROTEINS. In addition to full-length reports, short communications (usually not more than 4 printed pages) and prediction reports are welcome. Reviews are typically by invitation; authors are encouraged to submit proposed topics for consideration.
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