CD27 as a Diagnostic Biomarker and Its Role in Immune Heterogeneity and Predicting Clinical Drug Responses in Hashimoto's Thyroiditis.

IF 1.8 4区 医学 Q3 PHARMACOLOGY & PHARMACY
Pharmacogenomics & Personalized Medicine Pub Date : 2024-12-17 eCollection Date: 2024-01-01 DOI:10.2147/PGPM.S487091
Yan-Ming Dong, Guo-Qiang Bao
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引用次数: 0

Abstract

Objective: To identify key genes and potential molecular mechanisms associated with Hashimoto's thyroiditis (HT) to provide new insights for the development of diagnostic and therapeutic targets for this disease.

Methods: Differential expression analysis and weighted gene co-expression network analysis (WGCNA) were conducted to identify the differentially expressed genes (DEGs) associated with HT. A protein-protein interaction (PPI) network was used to obtain hub genes, with CD27 emerging as the key gene in HT. Gene Ontology (GO) analysis, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis, Gene Set Enrichment Analysis (GSEA), and HT-infiltrating immune cell components as well as functions were performed to further investigate the role and potential mechanism of CD27 in cohorts with high and low expression of CD27.

Results: CD27 was found to be upregulated in HT tissues and showed considerable clinical utility in HT. The CD27 of the high-expression cohort exhibited a higher enrichment in immune-related biological processes than the low-expression group. Cell-type Identification by Estimating Relative Subsets of RNA Transcripts (CIBERSORT) analysis revealed that several activated HT-infiltrating immune cells were strongly associated with CD27, suggesting that CD27 has the potential to be a marker for the immune state in HT.

Conclusion: In our study, CD27 was found to contribute to predicting clinical outcomes in patients with HT, including disease status and response to immunotherapy. CD27 is a promising biomarker for HT microenvironment remodeling, offering insights into new therapeutic approaches to improve treatment of HT.

CD27作为诊断性生物标志物及其在桥本甲状腺炎免疫异质性和预测临床药物反应中的作用
目的:鉴定桥本甲状腺炎(Hashimoto’s thyroiditis, HT)的相关关键基因和潜在分子机制,为开发桥本甲状腺炎的诊断和治疗靶点提供新的见解。方法:采用差异表达分析和加权基因共表达网络分析(WGCNA)鉴定与HT相关的差异表达基因(deg)。利用蛋白-蛋白相互作用(PPI)网络获得中心基因,CD27成为HT的关键基因。通过基因本体(GO)分析、京都基因与基因组百科全书(KEGG)通路富集分析、基因集富集分析(GSEA)、ht浸润免疫细胞组分及功能分析,进一步探讨CD27在CD27高表达和低表达队列中的作用及其潜在机制。结果:CD27在HT组织中表达上调,在HT中具有重要的临床应用价值。与低表达组相比,高表达组的CD27在免疫相关的生物学过程中表现出更高的富集。通过估计RNA转录本相对亚群(CIBERSORT)分析细胞类型鉴定显示,几种活化的HT浸润免疫细胞与CD27密切相关,这表明CD27有可能成为HT免疫状态的标记物。结论:在我们的研究中,CD27被发现有助于预测HT患者的临床结果,包括疾病状态和对免疫治疗的反应。CD27是一种很有前景的HT微环境重塑生物标志物,为改善HT治疗提供了新的治疗方法。
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来源期刊
Pharmacogenomics & Personalized Medicine
Pharmacogenomics & Personalized Medicine Biochemistry, Genetics and Molecular Biology-Molecular Medicine
CiteScore
3.30
自引率
5.30%
发文量
110
审稿时长
16 weeks
期刊介绍: Pharmacogenomics and Personalized Medicine is an international, peer-reviewed, open-access journal characterizing the influence of genotype on pharmacology leading to the development of personalized treatment programs and individualized drug selection for improved safety, efficacy and sustainability. In particular, emphasis will be given to: Genomic and proteomic profiling Genetics and drug metabolism Targeted drug identification and discovery Optimizing drug selection & dosage based on patient''s genetic profile Drug related morbidity & mortality intervention Advanced disease screening and targeted therapeutic intervention Genetic based vaccine development Patient satisfaction and preference Health economic evaluations Practical and organizational issues in the development and implementation of personalized medicine programs.
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