HeatGSNs: Integrating Eigenfilters and Low-Pass Graph Heat Kernels into Graph Spectral Convolutional Networks for Brain Tumor Segmentation and Classification.

IF 1.3 Q3 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING
Jihun Bae, Hunmin Lee, Jinglu Hu
{"title":"HeatGSNs: Integrating Eigenfilters and Low-Pass Graph Heat Kernels into Graph Spectral Convolutional Networks for Brain Tumor Segmentation and Classification.","authors":"Jihun Bae, Hunmin Lee, Jinglu Hu","doi":"10.1088/2057-1976/ada1db","DOIUrl":null,"url":null,"abstract":"<p><p>Recent studies on graph representation learning in brain tumor learning tasks have garnered significant interest by encoding and learning inherent relationships among the geometric features of tumors. There are serious class imbalance problems that occur on brain tumor MRI datasets. Impressive deep learning models like CNN- and Transformer-based can easily address this problem through their complex model architectures with large parameters.&#xD;However, graph-based networks are not suitable for this approach because of chronic over-smoothing and oscillation convergence problems. To address these challenges at once, we propose novel graph spectral convolutional networks called HeatGSNs, which incorporate eigenfilters and learnable low-pass graph heat kernels to capture geometric similarities within tumor classes. They operate to a continuous feature propagation mechanism derived by the forward finite difference of graph heat kernels, which is approximated by the cosine form for the shift-scaled Chebyshev polynomial and modified Bessel functions, leading to fast and accurate performance achievement. Our experimental results show a best average Dice score of 90%, an average Hausdorff Distance (95%) of 5.45mm, and an average accuracy of 80.11% in the BRATS2021 dataset. Moreover, HeatGSNs require significantly fewer parameters, averaging 1.79M, compared to other existing methods, demonstrating efficiency and effectiveness.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":" ","pages":""},"PeriodicalIF":1.3000,"publicationDate":"2024-12-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biomedical Physics & Engineering Express","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1088/2057-1976/ada1db","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING","Score":null,"Total":0}
引用次数: 0

Abstract

Recent studies on graph representation learning in brain tumor learning tasks have garnered significant interest by encoding and learning inherent relationships among the geometric features of tumors. There are serious class imbalance problems that occur on brain tumor MRI datasets. Impressive deep learning models like CNN- and Transformer-based can easily address this problem through their complex model architectures with large parameters. However, graph-based networks are not suitable for this approach because of chronic over-smoothing and oscillation convergence problems. To address these challenges at once, we propose novel graph spectral convolutional networks called HeatGSNs, which incorporate eigenfilters and learnable low-pass graph heat kernels to capture geometric similarities within tumor classes. They operate to a continuous feature propagation mechanism derived by the forward finite difference of graph heat kernels, which is approximated by the cosine form for the shift-scaled Chebyshev polynomial and modified Bessel functions, leading to fast and accurate performance achievement. Our experimental results show a best average Dice score of 90%, an average Hausdorff Distance (95%) of 5.45mm, and an average accuracy of 80.11% in the BRATS2021 dataset. Moreover, HeatGSNs require significantly fewer parameters, averaging 1.79M, compared to other existing methods, demonstrating efficiency and effectiveness.

HeatGSNs:将特征滤波器和低通图热核集成到图谱卷积网络中,用于脑肿瘤分割和分类。
最近关于脑肿瘤学习任务中的图表示学习的研究通过编码和学习肿瘤几何特征之间的内在关系引起了人们极大的兴趣。脑肿瘤MRI数据集存在严重的类不平衡问题。令人印象深刻的深度学习模型,如基于CNN和基于transformer的模型,可以通过它们具有大参数的复杂模型架构轻松解决这个问题。然而,基于图的网络不适合这种方法,因为它存在长期的过度平滑和振荡收敛问题。为了立即解决这些挑战,我们提出了新的图谱卷积网络,称为HeatGSNs,它结合了特征滤波器和可学习的低通图热核,以捕获肿瘤类别内的几何相似性。它们运行于由图热核的前向有限差分导出的连续特征传播机制,该机制由平移缩放的Chebyshev多项式和修正的Bessel函数的余弦形式近似,从而实现快速准确的性能实现。我们的实验结果表明,在BRATS2021数据集中,最佳平均Dice得分为90%,平均Hausdorff距离(95%)为5.45mm,平均准确率为80.11%。此外,与其他现有方法相比,HeatGSNs需要的参数明显减少,平均为1.79M,证明了效率和有效性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Biomedical Physics & Engineering Express
Biomedical Physics & Engineering Express RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING-
CiteScore
2.80
自引率
0.00%
发文量
153
期刊介绍: BPEX is an inclusive, international, multidisciplinary journal devoted to publishing new research on any application of physics and/or engineering in medicine and/or biology. Characterized by a broad geographical coverage and a fast-track peer-review process, relevant topics include all aspects of biophysics, medical physics and biomedical engineering. Papers that are almost entirely clinical or biological in their focus are not suitable. The journal has an emphasis on publishing interdisciplinary work and bringing research fields together, encompassing experimental, theoretical and computational work.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信