Dual-specificity phosphatase 23 functions as a promising prognostic biomarker in non-small cell lung cancer.

IF 1.6 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Seula Keum, Yoon Ji Lee, Jung-Woong Kim, Sangmyung Rhee
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引用次数: 0

Abstract

Background: The mechanical remodeling of tumor microenvironment is critical for non-small cell lung cancer (NSCLC) progression. Dual-specificity phosphatase 23 (DUSP23) has been previously identified as a mechano-responsive gene, but its role in NSCLC progression remains unknown.

Objective: We aim to elucidate the clinical significance of DUSP23 in NSCLC progression.

Methods: We analyzed the expression of DUSP23 in cancer using polyacrylamide hydrogels designed to mimic the stiffness of normal (soft; ~0.5 kPa) and cancerous (stiff; ~40 kPa) tissues. The prognostic significance of DUSP23 expression in patients was examined using public databases. Additionally, we conducted various cell-based assays and transcriptomic analyses in DUSP23-silenced NSCLC cell lines. A risk score prognosis model was constructed using univariate Cox regression and Kaplan-Meier analysis.

Results: Our findings show that DUSP23 is upregulated in stiff matrices and is highly associated with poor prognosis in patients with solid cancers such as NSCLC and breast cancer. Silencing of DUSP23 resulted in decreased cell proliferation and invasion. Transcriptomic profiling revealed that 182 genes were downregulated, and 230 genes upregulated following DUSP23-depletion. Notably, 182 downregulated genes were enriched in cancer-related pathways, including cell cycle progression and cytoskeleton organization. Through KEGG pathway analysis, we identified 11 cancer-related genes and developed a prognostic risk model. In this model, the high-risk group of NSCLC patients exhibited significantly shorter overall survival compared to low-risk group, based on public datasets.

Conclusion: Our study demonstrates the clinical significance of DUSP23 as a prognostic marker in NSCLC and highlights its potential role of DUSP23 in promoting NSCLC progression.

双特异性磷酸酶23作为一种有前景的非小细胞肺癌预后生物标志物。
背景:肿瘤微环境的机械重塑是非小细胞肺癌(NSCLC)进展的关键。双特异性磷酸酶23 (DUSP23)先前已被确定为一种机械反应基因,但其在NSCLC进展中的作用尚不清楚。目的:阐明DUSP23在非小细胞肺癌进展中的临床意义。方法:采用聚丙烯酰胺水凝胶模拟正常(柔软;~0.5 kPa)和癌性(僵硬;~ 40kpa)组织。利用公共数据库检测患者DUSP23表达的预后意义。此外,我们在dusp23沉默的NSCLC细胞系中进行了各种基于细胞的检测和转录组学分析。采用单因素Cox回归和Kaplan-Meier分析建立风险评分预后模型。结果:我们的研究结果表明,DUSP23在硬基质中表达上调,并与实体癌(如NSCLC和乳腺癌)患者的不良预后高度相关。DUSP23的沉默导致细胞增殖和侵袭能力下降。转录组学分析显示,在dusp23缺失后,182个基因下调,230个基因上调。值得注意的是,182个下调基因在癌症相关通路中富集,包括细胞周期进程和细胞骨架组织。通过KEGG通路分析,我们确定了11个癌症相关基因,并建立了预后风险模型。根据公开数据,在该模型中,高危组NSCLC患者的总生存期明显短于低危组。结论:本研究证实了DUSP23作为非小细胞肺癌预后标志物的临床意义,并强调了DUSP23在促进非小细胞肺癌进展中的潜在作用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Genes & genomics
Genes & genomics 生物-生化与分子生物学
CiteScore
3.70
自引率
4.80%
发文量
131
审稿时长
6-12 weeks
期刊介绍: Genes & Genomics is an official journal of the Korean Genetics Society (http://kgenetics.or.kr/). Although it is an official publication of the Genetics Society of Korea, membership of the Society is not required for contributors. It is a peer-reviewed international journal publishing print (ISSN 1976-9571) and online version (E-ISSN 2092-9293). It covers all disciplines of genetics and genomics from prokaryotes to eukaryotes from fundamental heredity to molecular aspects. The articles can be reviews, research articles, and short communications.
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