Draft genome sequence data of Serratia marcescens strain harboring bla_NDM-7 from Dhaka, Bangladesh.

IF 1 Q3 MULTIDISCIPLINARY SCIENCES

Data in Brief Pub Date : 2024-11-14 eCollection Date: 2024-12-01 DOI:10.1016/j.dib.2024.111133

K M Shayerul Abedin Shayer, Sabbir R Shuvo, Ishrat Jabeen, Mahmud Hossain, Sohidul Islam

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引用次数: 0

Abstract

Here, the draft genome sequence of a multi-drug resistant (MDR) Serratia marcescens strain BMD28, isolated from a clinical source from Dhaka, Bangladesh, has been reported. The sequence raw read files were generated using Illumina sequencing technology utilizing genomic DNA from the pure culture of this strain. The strain has a genome size of around 5.4 million base pairs, a GC content of 59.70 %, and 5,141 coding sequences. We conducted genomic studies using several bioinformatics tools focusing on resistance genes, virulence factors, toxin-antitoxin systems, and pangenome analysis. Strain BMD28 harbored the bla_NDM-7 gene in an IncX3 plasmid. A phylogenomic study with S. marcescens strains isolated worldwide revealed that our strain is in the same clade as other strains reported in Bangladesh. The data can be used primarily to understand the genomic content, epidemiology, and evolution of S. marcescens in Bangladesh. The genome sequence data of BMD28 has been deposited in the NCBI database under BioSample accession number SAMN41260295.

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来自孟加拉国达卡的粘质沙雷菌blaNDM-7菌株基因组序列数据草图。

本文报道了从孟加拉国达卡临床来源分离出的耐多药粘质沙雷氏菌BMD28株的基因组序列草图。利用该菌株纯培养的基因组DNA，利用Illumina测序技术生成序列原始读取文件。该菌株基因组大小约为540万碱基对，GC含量为59.70%，编码序列为5141条。我们使用几种生物信息学工具进行了基因组研究，重点是抗性基因、毒力因子、毒素-抗毒素系统和泛基因组分析。菌株BMD28在IncX3质粒中携带blaNDM-7基因。对世界各地分离的粘质葡萄球菌菌株进行的系统基因组学研究表明，我们的菌株与孟加拉国报道的其他菌株处于同一进化支。这些数据主要用于了解孟加拉国粘质葡萄球菌的基因组内容、流行病学和进化。BMD28基因组序列数据已存入NCBI数据库，BioSample登录号为SAMN41260295。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

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来源期刊

Data in Brief MULTIDISCIPLINARY SCIENCES-

CiteScore

3.10

自引率

0.00%

发文量

996

审稿时长

70 days

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