Structural Insight on the Selectivity of Calyx[4]Arene-Based Inhibitors of Mg2+-Dependent Atp-Hydrolases.

IF 2.8 4区 医学 Q3 CHEMISTRY, MEDICINAL
Molecular Informatics Pub Date : 2025-01-01 Epub Date: 2024-12-05 DOI:10.1002/minf.202400200
Alexey Rayevsky, Maksym Platonov, Bulgakov Elijah, Dmytro Volochnyuk, Tetyana Veklich, Sergiy Cherenok, Roman Rodik, Vitaliy Kalchenko, Sergiy Kosterin
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引用次数: 0

Abstract

Located in plasma membranes, ATP hydrolases are involved in several dynamic transport processes, helping to control the movement of ions across cell membranes. ATP hydrolase acts as a transport protein, converting energy from ATP hydrolysis into transport molecules against their concentration gradients. In addition to energy metabolism and active transport, ATP hydrolase is essential for maintaining cellular homeostasis and cell function. This study focused on the domain architecture model of P-type ATPases, which participate in the reaction cycles of ATP hydrolysis carried out by membrane transport systems - Na+, K+-ATPase and Ca2+, Mg2+-ATPase. Targeted modulation of Na+, K+-ATPase and Ca2+, Mg2+-ATPase by unnatural drugs is of greatest interest due to the lack of known effectors. This new discovery presents a convenient model based on our recent experimental studies of the membrane structures and myocytes of the uterine smooth muscle, the myometrium. This current study strongly supports the fact that nanosized calix[4]arenes functionalised on the upper rings of the macrocycle with biologically active phosphonic acid fragments can serve as selective and potent inhibitors of cation-transporting electroenzymes. This is how we discovered that calix[4]arene of methylenebisphosphonic acid C-97 and calix[4]arene of bis-aminophosphonic acid C-107 selectively and effectively (I0.5 <100 nM) inhibit the activity of Mg2+, ATP-dependent electrogenic Na+ K+ plasma membrane pump. As drug discovery in the field of Mg2+-ATPase inhibitors is uncharted territory, basic research holds the key to explaining and predicting the mechanism of interaction and action of different classes of compounds. In light of the presented results, new calix[4]arene compounds can be used as potent inhibitors of Mg2+, ATP-dependent electrogenic ion pumps.

基于Calyx[4]芳烃的Mg2+依赖性atp水解酶抑制剂选择性的结构分析。
ATP水解酶位于质膜上,参与多种动态转运过程,有助于控制离子在细胞膜上的运动。ATP水解酶作为一种转运蛋白,将ATP水解产生的能量根据其浓度梯度转化为转运分子。除了能量代谢和主动运输外,ATP水解酶对维持细胞稳态和细胞功能至关重要。本研究重点研究了p型ATP酶的结构域结构模型,p型ATP酶参与细胞膜转运系统Na+, K+-ATP酶和Ca2+, Mg2+-ATP酶进行ATP水解的反应循环。由于缺乏已知的效应物,非天然药物对Na+, K+- atp酶和Ca2+, Mg2+- atp酶的靶向调节是最感兴趣的。这一新发现基于我们最近对子宫平滑肌肌层的膜结构和肌细胞的实验研究提供了一个方便的模型。目前的研究有力地支持了这样一个事实,即在大环的上环上功能化的具有生物活性的磷酸片段的纳米杯[4]芳烃可以作为选择性和有效的阳离子运输电酶抑制剂。这就是我们如何选择性和有效地发现亚甲二膦酸C-97和二氨基膦酸C-107的杯状[4]芳烃(I0.5
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来源期刊
Molecular Informatics
Molecular Informatics CHEMISTRY, MEDICINAL-MATHEMATICAL & COMPUTATIONAL BIOLOGY
CiteScore
7.30
自引率
2.80%
发文量
70
审稿时长
3 months
期刊介绍: Molecular Informatics is a peer-reviewed, international forum for publication of high-quality, interdisciplinary research on all molecular aspects of bio/cheminformatics and computer-assisted molecular design. Molecular Informatics succeeded QSAR & Combinatorial Science in 2010. Molecular Informatics presents methodological innovations that will lead to a deeper understanding of ligand-receptor interactions, macromolecular complexes, molecular networks, design concepts and processes that demonstrate how ideas and design concepts lead to molecules with a desired structure or function, preferably including experimental validation. The journal''s scope includes but is not limited to the fields of drug discovery and chemical biology, protein and nucleic acid engineering and design, the design of nanomolecular structures, strategies for modeling of macromolecular assemblies, molecular networks and systems, pharmaco- and chemogenomics, computer-assisted screening strategies, as well as novel technologies for the de novo design of biologically active molecules. As a unique feature Molecular Informatics publishes so-called "Methods Corner" review-type articles which feature important technological concepts and advances within the scope of the journal.
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