Ab initio conformational analysis of α/β-D-xylopyranose at pyrolysis conditions

IF 2.9 3区 化学 Q3 CHEMISTRY, PHYSICAL
Bernardo Ballotta, Jacopo Lupi, Leandro Ayarde-Henríquez, Stephen Dooley
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Abstract

Xylopyranose is the principal monosaccharide unit of hemicellulose, one of the three major biopolymers of lignocellulosic biomass. Understanding its decomposition mechanism is increasingly relevant for thermochemical biorefinery research such as pyrolysis. Significant efforts have been made to study its chemical and structural properties using both computational and experimental methods. However, due to its high structural flexibility and numerous hydroxyl groups, various metastable conformers arise. In this work, we performed a computational exploration of the conformational space of both anomeric forms, α and β, of D-xylopyranose using the semi-empirical GFN2-xTB method in conjunction with metadynamics and density functional theory simulations for structural optimization and vibrational analysis. Xylopyranose conformers free energy and enthalpy variations are analyzed across temperatures typical of fast biomass pyrolysis (298–1068 K), with the Boltzmann population distribution of the most populated conformers determined. This study provides a detailed computational analysis of the conformational space and thermochemistry of xylopyranose. Additionally, 44 and 59 conformers of the α and β anomers were found, for both of which a selection of 10 conformers based on Boltzmann population distribution analysis is performed to reduce the conformational space for ab initio studies of the pyrolysis reaction kinetics.

Abstract Image

热解条件下 α/β-D- xylopyranose 的 Ab initio 构象分析
木糖是木质纤维素生物质三大生物聚合物之一半纤维素的主要单糖单元。了解其分解机理与热解等热化学生物精炼研究的关系日益密切。人们利用计算和实验方法对其化学和结构特性进行了大量研究。然而,由于其结构的高度灵活性和众多的羟基,出现了各种可转移的构象。在这项工作中,我们采用半经验 GFN2-xTB方法,结合元动力学和密度泛函理论模拟,对 D-木吡喃糖的两种异构体形式 α 和 β 的构象空间进行了计算探索,以进行结构优化和振动分析。分析了木吡喃糖构象在快速生物质热解典型温度(298-1068 K)下的自由能和焓的变化,并确定了最多构象的波尔兹曼种群分布。这项研究对木糖的构象空间和热化学进行了详细的计算分析。此外,还发现了 α 和 β 异构体的 44 和 59 个构象,并根据波尔兹曼种群分布分析对这两种构象选择了 10 个构象,从而缩小了构象空间,以便对热解反应动力学进行 ab initio 研究。
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来源期刊
Physical Chemistry Chemical Physics
Physical Chemistry Chemical Physics 化学-物理:原子、分子和化学物理
CiteScore
5.50
自引率
9.10%
发文量
2675
审稿时长
2.0 months
期刊介绍: Physical Chemistry Chemical Physics (PCCP) is an international journal co-owned by 19 physical chemistry and physics societies from around the world. This journal publishes original, cutting-edge research in physical chemistry, chemical physics and biophysical chemistry. To be suitable for publication in PCCP, articles must include significant innovation and/or insight into physical chemistry; this is the most important criterion that reviewers and Editors will judge against when evaluating submissions. The journal has a broad scope and welcomes contributions spanning experiment, theory, computation and data science. Topical coverage includes spectroscopy, dynamics, kinetics, statistical mechanics, thermodynamics, electrochemistry, catalysis, surface science, quantum mechanics, quantum computing and machine learning. Interdisciplinary research areas such as polymers and soft matter, materials, nanoscience, energy, surfaces/interfaces, and biophysical chemistry are welcomed if they demonstrate significant innovation and/or insight into physical chemistry. Joined experimental/theoretical studies are particularly appreciated when complementary and based on up-to-date approaches.
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