Exploration of piperidine-2-carbaldehyde by spectroscopic, topology analysis, molecular docking, and molecular dynamic simulation with solvents effect – A DFT and TD-DFT approach

IF 5.3 2区 化学 Q2 CHEMISTRY, PHYSICAL
Deepthi Joseph , Pradeep Katta , R. Rajesh , G. Saravana Kumar
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Abstract

Density functional theory and spectroscopic techniques including Fourier Transform-IR, Fourier Transform-Raman, and UV–Visible are used in theoretical investigations on the compound Piperidine-2-carbaldehyde. The equilibrium shape, many molecule constituents, atom bonding, and vibrational frequencies are calculated using density functional theory. The Natural Bond Orbital researches and estimates the charge transfer of inter and intramolecular levels. The compound underwent topological investigations using QTAIM analysis. ELF, LOL, NCI and RDG analysis carried out. Using the HOMO and LUMO energy levels from the DFT method, all other relevant electronic factors that account for the biological activity of the compound are calculated. Simulated UV–Vis spectra with multiple solvents are used in the TD-DFT technique to determine the maximum absorption wavelength. In the qualitative and quantitative analysis, the volatile areas are identified by MEP and Fukui function analysis Molecular docking and drug-likeness are employed in drug discovery to treasure the ideal orientation of protein and ligand connections for neurological studies. The simulation of molecular dynamics confirms the interactions of the ligand on the protein framework.

Abstract Image

通过光谱、拓扑分析、分子对接和分子动力学模拟探索哌啶-2-甲醛的溶剂效应 - DFT 和 TD-DFT 方法
在对哌啶-2-甲醛化合物进行理论研究时,使用了密度泛函理论和光谱技术,包括傅立叶变换红外光谱、傅立叶变换拉曼光谱和紫外可见光谱。利用密度泛函理论计算了平衡形状、多种分子成分、原子成键和振动频率。自然键轨道研究和估算了分子间和分子内的电荷转移。利用 QTAIM 分析法对化合物进行了拓扑学研究。进行了 ELF、LOL、NCI 和 RDG 分析。利用 DFT 方法得出的 HOMO 和 LUMO 能级,计算了该化合物生物活性的所有其他相关电子因子。在 TD-DFT 技术中使用了多种溶剂的模拟紫外可见光谱,以确定最大吸收波长。在定性和定量分析中,通过 MEP 和 Fukui 函数分析确定了挥发性区域 分子对接和药物相似性被用于药物发现,以珍惜神经学研究中蛋白质和配体连接的理想方位。分子动力学模拟证实了配体在蛋白质框架上的相互作用。
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来源期刊
Journal of Molecular Liquids
Journal of Molecular Liquids 化学-物理:原子、分子和化学物理
CiteScore
10.30
自引率
16.70%
发文量
2597
审稿时长
78 days
期刊介绍: The journal includes papers in the following areas: – Simple organic liquids and mixtures – Ionic liquids – Surfactant solutions (including micelles and vesicles) and liquid interfaces – Colloidal solutions and nanoparticles – Thermotropic and lyotropic liquid crystals – Ferrofluids – Water, aqueous solutions and other hydrogen-bonded liquids – Lubricants, polymer solutions and melts – Molten metals and salts – Phase transitions and critical phenomena in liquids and confined fluids – Self assembly in complex liquids.– Biomolecules in solution The emphasis is on the molecular (or microscopic) understanding of particular liquids or liquid systems, especially concerning structure, dynamics and intermolecular forces. The experimental techniques used may include: – Conventional spectroscopy (mid-IR and far-IR, Raman, NMR, etc.) – Non-linear optics and time resolved spectroscopy (psec, fsec, asec, ISRS, etc.) – Light scattering (Rayleigh, Brillouin, PCS, etc.) – Dielectric relaxation – X-ray and neutron scattering and diffraction. Experimental studies, computer simulations (MD or MC) and analytical theory will be considered for publication; papers just reporting experimental results that do not contribute to the understanding of the fundamentals of molecular and ionic liquids will not be accepted. Only papers of a non-routine nature and advancing the field will be considered for publication.
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