Accumulating waves of random mutations before fixation.

IF 2.2 3区 物理与天体物理 Q2 PHYSICS, FLUIDS & PLASMAS
Marius Moeller, Benjamin Werner, Weini Huang
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Abstract

Mutations provide variation for evolution to emerge. A quantitative analysis of how mutations arising in single individuals expand and possibly fixate in a population is essential for studying evolutionary processes. While it is intuitive to expect that a continuous influx of mutations will lead to a continuous flow of mutations fixating in a stable constant population, joint fixation of multiple mutations occur frequently in stochastic simulations even under neutral selection. We quantitatively measure and analyze the distribution of joint fixation events of neutral mutations in constant populations and discussed the connection with previous results. We propose a new concept, the mutation "waves," where multiple mutations reach given frequencies simultaneously. We show that all but the lowest frequencies of the variant allele frequency distribution are dominated by single mutation "waves," which approximately follow an exponential distribution in terms of size. Consequently, large swaths of empty frequencies are observed in the variant allele frequency distributions, with a few frequencies having numbers of mutations far in excess of the expected average values over multiple realizations. We quantify the amount of time each frequency is empty of mutations and further show that the discrete mutation waves average out to a continuous distribution named as the wave frequency distribution, the shape of which is predictable based on few model parameters.

在固定前累积一波随机突变。
变异为进化提供了变数。对单个个体产生的突变如何在种群中扩展并可能固定下来进行定量分析,对于研究进化过程至关重要。虽然直观上,不断涌入的突变会导致突变不断固定在稳定不变的种群中,但在随机模拟中,即使在中性选择条件下,多个突变的联合固定也会频繁发生。我们定量测量并分析了恒定种群中中性突变联合固定事件的分布,并讨论了与之前结果的联系。我们提出了一个新概念--突变 "波",即多个突变同时达到给定频率。我们发现,在变异等位基因频率分布中,除了最低频率外,其他频率都被单个突变 "波 "所支配,而这些突变 "波 "的大小近似于指数分布。因此,在变异等位基因频率分布中观察到大片空白频率,少数频率的突变数量远远超过了多次变异的预期平均值。我们量化了每个频率没有突变的时间,并进一步表明离散突变波平均为一个连续分布,称为波频分布,其形状可根据少量模型参数预测。
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来源期刊
Physical Review E
Physical Review E PHYSICS, FLUIDS & PLASMASPHYSICS, MATHEMAT-PHYSICS, MATHEMATICAL
CiteScore
4.50
自引率
16.70%
发文量
2110
期刊介绍: Physical Review E (PRE), broad and interdisciplinary in scope, focuses on collective phenomena of many-body systems, with statistical physics and nonlinear dynamics as the central themes of the journal. Physical Review E publishes recent developments in biological and soft matter physics including granular materials, colloids, complex fluids, liquid crystals, and polymers. The journal covers fluid dynamics and plasma physics and includes sections on computational and interdisciplinary physics, for example, complex networks.
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