Explainable AI-based method for brain abnormality diagnostics using MRI

IF 4.9 2区 医学 Q1 ENGINEERING, BIOMEDICAL
Mohamed Hosny , Ahmed M. Elshenhab , Ahmed Maged
{"title":"Explainable AI-based method for brain abnormality diagnostics using MRI","authors":"Mohamed Hosny ,&nbsp;Ahmed M. Elshenhab ,&nbsp;Ahmed Maged","doi":"10.1016/j.bspc.2024.107184","DOIUrl":null,"url":null,"abstract":"<div><div>Detecting brain abnormalities using magnetic resonance imaging (MRI) is a vital frontier in neurological research. Therefore, accurate methods are essential for guiding neurologists in diagnosing enigmatic disorders such as Alzheimer’s disease (AD) and brain tumors. These methods aid in the early detection and treatment of these formidable conditions. However, traditional techniques often suffer from high computational complexity and efficiency. Additionally, existing detection models lack the ability to explain their predictions, rendering them untrustworthy for clinicians. This study presents an explainable framework for automatic brain abnormality detection in MRI images. The methodology includes a robust preprocessing pipeline that ameliorates image relevance through image thresholding, morphological operations and adaptive edge detection using the AutoCanny algorithm. AutoCanny method automatically adjusts thresholds to ensure effective edge detection across different images. Then, the MRI images are fed to efficient vision transformer model (EfficientViT) for classification. EfficientViT features a memory-efficient sandwich layout, cascaded group attention module and optimized parameter reallocation. These innovations collectively enhanced the model efficiency in terms of memory usage, computational complexity and parameter optimization. Moreover, gradient-based Shapley additive explanations is employed to explain the EfficientViT model predictions. EfficientViT achieved the highest accuracy of 99.24%, 97.1%, 99.5% and 98.87% on the AD, Tumor1, Tumor2 and merged datasets, respectively. Furthermore, the proposed model outperformed longstanding deep learning techniques. These findings have significant implications for uncovering hidden information associated with brain abnormality as well as improving the diagnostic process and treatment planning. Our model can aid neurologists in the validation of manual MRI neurological disorders screenings.</div></div>","PeriodicalId":55362,"journal":{"name":"Biomedical Signal Processing and Control","volume":"100 ","pages":"Article 107184"},"PeriodicalIF":4.9000,"publicationDate":"2024-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biomedical Signal Processing and Control","FirstCategoryId":"5","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1746809424012424","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"ENGINEERING, BIOMEDICAL","Score":null,"Total":0}
引用次数: 0

Abstract

Detecting brain abnormalities using magnetic resonance imaging (MRI) is a vital frontier in neurological research. Therefore, accurate methods are essential for guiding neurologists in diagnosing enigmatic disorders such as Alzheimer’s disease (AD) and brain tumors. These methods aid in the early detection and treatment of these formidable conditions. However, traditional techniques often suffer from high computational complexity and efficiency. Additionally, existing detection models lack the ability to explain their predictions, rendering them untrustworthy for clinicians. This study presents an explainable framework for automatic brain abnormality detection in MRI images. The methodology includes a robust preprocessing pipeline that ameliorates image relevance through image thresholding, morphological operations and adaptive edge detection using the AutoCanny algorithm. AutoCanny method automatically adjusts thresholds to ensure effective edge detection across different images. Then, the MRI images are fed to efficient vision transformer model (EfficientViT) for classification. EfficientViT features a memory-efficient sandwich layout, cascaded group attention module and optimized parameter reallocation. These innovations collectively enhanced the model efficiency in terms of memory usage, computational complexity and parameter optimization. Moreover, gradient-based Shapley additive explanations is employed to explain the EfficientViT model predictions. EfficientViT achieved the highest accuracy of 99.24%, 97.1%, 99.5% and 98.87% on the AD, Tumor1, Tumor2 and merged datasets, respectively. Furthermore, the proposed model outperformed longstanding deep learning techniques. These findings have significant implications for uncovering hidden information associated with brain abnormality as well as improving the diagnostic process and treatment planning. Our model can aid neurologists in the validation of manual MRI neurological disorders screenings.
利用核磁共振成像诊断大脑异常的可解释人工智能方法
利用磁共振成像(MRI)检测大脑异常是神经学研究的一个重要前沿领域。因此,准确的方法对于指导神经学家诊断阿尔茨海默病(AD)和脑肿瘤等神秘疾病至关重要。这些方法有助于早期发现和治疗这些可怕的疾病。然而,传统技术往往存在计算复杂度高、效率低的问题。此外,现有的检测模型缺乏解释其预测结果的能力,因此无法为临床医生所信任。本研究提出了一个可解释的框架,用于自动检测核磁共振成像图像中的大脑异常。该方法包括一个强大的预处理管道,通过图像阈值、形态学操作和使用 AutoCanny 算法的自适应边缘检测来改善图像相关性。AutoCanny 方法会自动调整阈值,以确保在不同图像中进行有效的边缘检测。然后,将核磁共振图像输入高效视觉转换器模型(EfficientViT)进行分类。EfficientViT 采用了节省内存的三明治布局、级联群注意模块和优化的参数重新分配。这些创新共同提高了模型在内存使用、计算复杂度和参数优化方面的效率。此外,EfficientViT 还采用了基于梯度的夏普利加法解释来解释模型预测。在AD、Tumor1、Tumor2和合并数据集上,EfficientViT分别达到了99.24%、97.1%、99.5%和98.87%的最高准确率。此外,所提出的模型还优于长期使用的深度学习技术。这些发现对于揭示与大脑异常相关的隐藏信息以及改善诊断过程和治疗计划具有重要意义。我们的模型可以帮助神经科医生验证手动磁共振成像神经系统疾病筛查。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Biomedical Signal Processing and Control
Biomedical Signal Processing and Control 工程技术-工程:生物医学
CiteScore
9.80
自引率
13.70%
发文量
822
审稿时长
4 months
期刊介绍: Biomedical Signal Processing and Control aims to provide a cross-disciplinary international forum for the interchange of information on research in the measurement and analysis of signals and images in clinical medicine and the biological sciences. Emphasis is placed on contributions dealing with the practical, applications-led research on the use of methods and devices in clinical diagnosis, patient monitoring and management. Biomedical Signal Processing and Control reflects the main areas in which these methods are being used and developed at the interface of both engineering and clinical science. The scope of the journal is defined to include relevant review papers, technical notes, short communications and letters. Tutorial papers and special issues will also be published.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信