Natriuretic effect of 4',5-dihydroxy-6,7-methylenedioxyflavonol-3-O-α-L-rhamnopyranosyl-(1→2)-β-D-xylopyranoside from Boldoa purpurascens: in silico and in vivo studies.

IF 2.7 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Yudith Cañizares-Carmenate, Dulce M González-Mosquera, Yunier Perera-Sardiña, Erix W Hernández-Rodríguez, Roberto Díaz-Amador, Juan A Castillo-Garit, Emmy Tuenter
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引用次数: 0

Abstract

Aqueous leaf extracts of Boldoa purpurascens are widely used because of their diuretic, natriuretic, antiurolithiatic, anti-inflammatory and antihypertensive properties. The major component of the extract is the flavonoid 4',5-dihydroxy-6,7-methylenedioxyflavonol-3-O-α-L-rhamnopyranosyl-(1→2)-β-D-xylopyranoside, but it is not known if this compound is responsible for the biological activity. The objective of this work is to develop effective in silico tools that allow predicting the possible activity of the flavonoid aglycone as an inhibitor of metalloproteases that regulate renal fluid excretion. First, a mathematical ligand-based classification model was developed, using an artificial intelligence and machine learning technique of support vector machines to find the relationship between chemical structure and biological activity. This showed good fit of the statistical parameters with an accuracy greater than 90%, offering a priori information of the flavonoid activity. Subsequently, the flavonoid aglycone was docked to the active site of the enzymes thermolysin (PDB: 6YMS), angiotensin-converting enzyme (PDB: 6TT4) and neprilysin (PDB: 6SUK) using the Extra Precision glide method (Glide-XP), showing conformations with binding energies lower than -5 Kcal/mol. In this study, possible interactions were determined at the catalytic site, where the coordination of negatively charged pharmacophoric groups with the zinc atom of these enzymes is observed. Finally, a preliminary in vivo evaluation was carried out using a diuresis-natriuresis model with sodium quantification in urine which revealed good activity profiles. These results are in correspondence with the ethnopharmacological use of the plant as a diuretic-natriuretic and for the treatment of hypertension.

来自 Boldoa purpurascens 的 4',5-二羟基-6,7-亚甲基二氧黄酮醇-3-O-α-L-吡喃鼠李糖基-(1→2)-β-D-吡喃木糖苷的利尿作用:硅学和体内研究。
Boldoa purpurascens 的水溶性叶提取物具有利尿、利尿、抗尿酸盐、抗炎和降压等功效,因此被广泛使用。提取物的主要成分是黄酮类化合物 4',5-二羟基-6,7-亚甲二氧基黄烷醇-3-O-α-L-吡喃鼠李糖基-(1→2)-β-D-吡喃木糖苷,但这种化合物是否具有生物活性尚不清楚。这项工作的目的是开发有效的硅学工具,以预测黄酮苷作为调节肾液排泄的金属蛋白酶抑制剂可能具有的活性。首先,利用支持向量机的人工智能和机器学习技术,开发了一个基于配体的数学分类模型,以找出化学结构与生物活性之间的关系。结果显示,统计参数拟合良好,准确率超过 90%,提供了类黄酮活性的先验信息。随后,利用超精密滑行方法(Glide-XP)将黄酮苷元与热溶酶(PDB:6YMS)、血管紧张素转换酶(PDB:6TT4)和肾溶酶(PDB:6SUK)的活性位点对接,显示出结合能低于-5 Kcal/mol的构象。在这项研究中,确定了催化位点可能存在的相互作用,在该位点观察到带负电荷的药效基团与这些酶的锌原子配位。最后,利用尿钠定量的利尿-遗尿模型进行了初步的体内评估,结果显示活性良好。这些结果与该植物作为利尿-利尿剂和治疗高血压的民族药理学用途相符。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Biomolecular Structure & Dynamics
Journal of Biomolecular Structure & Dynamics 生物-生化与分子生物学
CiteScore
8.90
自引率
9.10%
发文量
597
审稿时长
2 months
期刊介绍: The Journal of Biomolecular Structure and Dynamics welcomes manuscripts on biological structure, dynamics, interactions and expression. The Journal is one of the leading publications in high end computational science, atomic structural biology, bioinformatics, virtual drug design, genomics and biological networks.
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