Haijing Luan , Kaixing Yang , Taiyuan Hu , Jifang Hu , Siyao Liu , Ruilin Li , Jiayin He , Rui Yan , Xiaobing Guo , Niansong Qian , Beifang Niu
{"title":"Review of deep learning-based pathological image classification: From task-specific models to foundation models","authors":"Haijing Luan , Kaixing Yang , Taiyuan Hu , Jifang Hu , Siyao Liu , Ruilin Li , Jiayin He , Rui Yan , Xiaobing Guo , Niansong Qian , Beifang Niu","doi":"10.1016/j.future.2024.107578","DOIUrl":null,"url":null,"abstract":"<div><div>Pathological diagnosis is considered the gold standard in cancer diagnosis, playing a crucial role in guiding treatment decisions and prognosis assessment for patients. However, achieving accurate diagnosis of pathology images poses several challenges, including the scarcity of pathologists and the inherent subjective variability in their interpretations. The advancements in whole-slide imaging technology and deep learning methods provide new opportunities for digital pathology, especially in low-resource settings, by enabling effective pathological image classification. In this article, we begin by introducing the datasets, which include both unimodal and multimodal types, as essential resources for advancing pathological image classification. We then provide a comprehensive overview of deep learning-based pathological image classification models, covering task-specific models such as supervised, unsupervised, weakly supervised, and semi-supervised learning methods, as well as unimodal and multimodal foundation models. Next, we review tumor-related indicators that can be predicted from pathological images, focusing on two main categories: indicators that can be recognized by pathologists, such as tumor classification, grading, and region recognition; and those that cannot be recognized by pathologists, including molecular subtype prediction, tumor origin prediction, biomarker prediction, and survival prediction. Finally, we summarize the key challenges in digital pathology and propose potential future directions.</div></div>","PeriodicalId":55132,"journal":{"name":"Future Generation Computer Systems-The International Journal of Escience","volume":"164 ","pages":"Article 107578"},"PeriodicalIF":6.2000,"publicationDate":"2024-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Future Generation Computer Systems-The International Journal of Escience","FirstCategoryId":"94","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0167739X24005429","RegionNum":2,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, THEORY & METHODS","Score":null,"Total":0}
引用次数: 0
Abstract
Pathological diagnosis is considered the gold standard in cancer diagnosis, playing a crucial role in guiding treatment decisions and prognosis assessment for patients. However, achieving accurate diagnosis of pathology images poses several challenges, including the scarcity of pathologists and the inherent subjective variability in their interpretations. The advancements in whole-slide imaging technology and deep learning methods provide new opportunities for digital pathology, especially in low-resource settings, by enabling effective pathological image classification. In this article, we begin by introducing the datasets, which include both unimodal and multimodal types, as essential resources for advancing pathological image classification. We then provide a comprehensive overview of deep learning-based pathological image classification models, covering task-specific models such as supervised, unsupervised, weakly supervised, and semi-supervised learning methods, as well as unimodal and multimodal foundation models. Next, we review tumor-related indicators that can be predicted from pathological images, focusing on two main categories: indicators that can be recognized by pathologists, such as tumor classification, grading, and region recognition; and those that cannot be recognized by pathologists, including molecular subtype prediction, tumor origin prediction, biomarker prediction, and survival prediction. Finally, we summarize the key challenges in digital pathology and propose potential future directions.
期刊介绍:
Computing infrastructures and systems are constantly evolving, resulting in increasingly complex and collaborative scientific applications. To cope with these advancements, there is a growing need for collaborative tools that can effectively map, control, and execute these applications.
Furthermore, with the explosion of Big Data, there is a requirement for innovative methods and infrastructures to collect, analyze, and derive meaningful insights from the vast amount of data generated. This necessitates the integration of computational and storage capabilities, databases, sensors, and human collaboration.
Future Generation Computer Systems aims to pioneer advancements in distributed systems, collaborative environments, high-performance computing, and Big Data analytics. It strives to stay at the forefront of developments in grids, clouds, and the Internet of Things (IoT) to effectively address the challenges posed by these wide-area, fully distributed sensing and computing systems.