Shotgun metagenomics sequencing data of root microbial community of Huanglongbing-infected Citrus nobilis

IF 1 Q3 MULTIDISCIPLINARY SCIENCES

Data in Brief Pub Date : 2024-10-22 DOI:10.1016/j.dib.2024.111061

Dinh Minh Tran, Thi Huyen Nguyen, Anh Dzung Nguyen

引用次数: 0

Abstract

Huanglongbing (HLB) is the most serious citrus disease in Vietnam. For the first time, this paper reported root microbial data of HLB-infected Citrus nobilis grown in Dak Lak Province, Vietnam, for further work toward controlling this disease. Roots of HLB-infected C. nobilis were collected, and the genomic DNA was isolated. The Illumina platform was used to sequence the shotgun metagenomic library, and bioinformatic tools were used to analyze sequenced data. We found that 4 kingdoms, 27 phyla, 57 classes, 124 orders, 246 families, 722 genera, and 1758 species of the root microbiome were identified from the sample. Actinomycetota was the predominant phylum (47.37 %), and biosynthesis was the primary function (57.38 %) of the microbiome.

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黄龙病柑橘根部微生物群落的散弹枪元基因组测序数据

黄龙病（HLB）是越南最严重的柑橘病害。本文首次报告了在越南达乐省种植的受 HLB 感染的柑橘根部微生物数据，以便进一步开展防治工作。本文采集了受 HLB 感染的柑橘根部，并分离了基因组 DNA。利用 Illumina 平台对射弹元基因组文库进行测序，并使用生物信息学工具分析测序数据。我们发现，从样本中确定了根微生物组的 4 个界、27 个门、57 个类、124 个目、246 个科、722 个属和 1758 个种。放线菌门（Actinomycetota）是最主要的门类（47.37%），生物合成是微生物组的主要功能（57.38%）。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

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来源期刊

Data in Brief MULTIDISCIPLINARY SCIENCES-

CiteScore

3.10

自引率

0.00%

发文量

996

审稿时长

70 days

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