Material properties of biomolecular condensates emerge from nanoscale dynamics.

ArXiv Pub Date : 2025-07-20
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Abstract

Biomolecular condensates form by phase separation of biological polymers and have important functions in the cell $-$ functions that are inherently connected to their physical properties. A remarkable aspect of such condensates is that their viscoelastic properties can vary by orders of magnitude, but it has remained unclear how these pronounced differences are rooted in the nanoscale dynamics at the molecular level. Here we investigate a series of condensates formed by complex coacervation that span about two orders of magnitude in molecular dynamics, diffusivity, and viscosity. We find that the nanoscale chain dynamics on the nano- to microsecond timescale can be accurately related to both translational diffusion and mesoscale condensate viscosity by analytical relations from polymer physics. Atomistic simulations reveal that the observed differences in friction $-$ a key quantity underlying these relations $-$ are caused by differences in inter-residue contact lifetimes, leading to the vastly different dynamics among the condensates. The rapid exchange of inter-residue contacts we observe may be a general mechanism for preventing dynamic arrest in compartments densely packed with polyelectrolytes, such as the cell nucleus.

蛋白质链动力学产生的生物分子凝聚物的中尺度特性。
生物分子凝聚体是通过生物聚合物的相分离形成的。由此产生的无膜细胞器的细胞功能与其在广泛的长度和时间尺度范围内的物理特性密切相关:从单个分子的纳秒级动力学及其相互作用,到凝聚体中分子的微秒级平移扩散,再到它们在介观尺度上的粘弹性能,无不如此。然而,如何将这些跨尺度的特性定量联系起来仍不清楚。在这里,我们将单分子荧光、相关光谱学、微流变学和大规模分子动力学模拟结合起来,对不同的凝聚物进行了研究,这些凝聚物是由复杂的共凝作用形成的,粘度和它们在分子尺度上的动力学特性相差约两个数量级。值得注意的是,我们发现致密相中蛋白质链动态的绝对时间尺度可以通过包括纠缠在内的聚合物溶液劳斯理论与平移扩散和凝聚态粘度定量、准确地联系起来。模拟结果表明,所观察到的大范围动力学现象源于氨基酸残基之间不同的接触寿命,在聚合物模型的均场描述中,这导致了作用在链上的摩擦力的差异。这些结果表明,非常简单的物理原理就能将生物分子凝聚体的中尺度特性与它们在纳米尺度上的动力学联系起来。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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