Bayesian parameter inference for epithelial mechanics

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY
Xin Yan , Goshi Ogita , Shuji Ishihara , Kaoru Sugimura
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引用次数: 0

Abstract

Cell-based mechanical models, such as the Cell Vertex Model (CVM), have proven useful for studying the mechanical control of epithelial tissue dynamics. We recently developed a statistical method called image-based parameter inference for formulating CVM model functions and estimating their parameters from image data of epithelial tissues. In this study, we employed Bayesian statistics to improve the utility and flexibility of image-based parameter inference. Tests on synthetic data confirmed that both our non-hierarchical and hierarchical Bayesian models provide accurate estimates of model parameters. By applying this method to Drosophila wings, we demonstrated that the reliability of parameter estimation is closely linked to the mechanical anisotropies present in the tissue. Moreover, we revealed that the cortical elasticity term is dispensable for explaining force-shape correlations in vivo. We anticipate that the flexibility of the Bayesian statistical framework will facilitate the integration of various types of information, thereby contributing to the quantitative dissection of the mechanical control of tissue dynamics.
上皮力学的贝叶斯参数推断。
基于细胞的机械模型,如细胞顶点模型(CVM),已被证明有助于研究上皮组织动态的机械控制。我们最近开发了一种称为基于图像的参数推断的统计方法,用于制定 CVM 模型函数,并从上皮组织的图像数据中估计其参数。在这项研究中,我们采用了贝叶斯统计方法来提高基于图像的参数推断的实用性和灵活性。对合成数据的测试证实,我们的非分层贝叶斯模型和分层贝叶斯模型都能准确估计模型参数。通过将这种方法应用于果蝇翅膀,我们证明了参数估计的可靠性与组织中存在的机械各向异性密切相关。此外,我们还揭示了皮层弹性项对于解释体内力-形状相关性是不可或缺的。我们预计贝叶斯统计框架的灵活性将有助于整合各种类型的信息,从而为定量分析组织动力学的机械控制做出贡献。
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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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