{"title":"A multi-class fundus disease classification system based on an adaptive scale discriminator and hybrid loss","authors":"Shiyu Zhou, Jue Wang, Bo Li","doi":"10.1016/j.compbiolchem.2024.108241","DOIUrl":null,"url":null,"abstract":"<div><div>Fundus images are crucial in the observation and detection of ophthalmic diseases. However, detecting multiple ophthalmic diseases from fundus images using deep learning techniques is a complex and challenging task One challenge is the complexity of fundus disease structures, which leads to low detection accuracy. Another challenge is the class imbalance problem common in multi-label image classification, which increases the difficulty of algorithm training and evaluation. To address these issues, this study leverages deep learning to propose an ophthalmic disease classification system. We first employ ResNet50 as the backbone network to extract image features, and then use our designed multi-dimensional attention module and adaptive scale discriminator to enhance the network's ability to detect disease features. During training, we innovatively propose a hybrid loss function method to improve the detection capability on imbalanced data. Finally, we conducted experiments on the ODRI-5K dataset with the proposed classification system. In the test set, our method achieved an AUC of 98.53 and an F1-score of 89.73. This result fully demonstrates the excellent disease classification capability of our method. In summary, the multi-label fundus image disease classification system we proposed exhibits outstanding recognition capability, providing an effective solution for the diagnosis of multi-label fundus image diseases.</div></div>","PeriodicalId":10616,"journal":{"name":"Computational Biology and Chemistry","volume":"113 ","pages":"Article 108241"},"PeriodicalIF":2.6000,"publicationDate":"2024-10-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computational Biology and Chemistry","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1476927124002299","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Fundus images are crucial in the observation and detection of ophthalmic diseases. However, detecting multiple ophthalmic diseases from fundus images using deep learning techniques is a complex and challenging task One challenge is the complexity of fundus disease structures, which leads to low detection accuracy. Another challenge is the class imbalance problem common in multi-label image classification, which increases the difficulty of algorithm training and evaluation. To address these issues, this study leverages deep learning to propose an ophthalmic disease classification system. We first employ ResNet50 as the backbone network to extract image features, and then use our designed multi-dimensional attention module and adaptive scale discriminator to enhance the network's ability to detect disease features. During training, we innovatively propose a hybrid loss function method to improve the detection capability on imbalanced data. Finally, we conducted experiments on the ODRI-5K dataset with the proposed classification system. In the test set, our method achieved an AUC of 98.53 and an F1-score of 89.73. This result fully demonstrates the excellent disease classification capability of our method. In summary, the multi-label fundus image disease classification system we proposed exhibits outstanding recognition capability, providing an effective solution for the diagnosis of multi-label fundus image diseases.
期刊介绍:
Computational Biology and Chemistry publishes original research papers and review articles in all areas of computational life sciences. High quality research contributions with a major computational component in the areas of nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and practice of either biology-specific or chemical-biology-specific modeling, and structural biology of nucleic acids and proteins are particularly welcome. Exceptionally high quality research work in bioinformatics, systems biology, ecology, computational pharmacology, metabolism, biomedical engineering, epidemiology, and statistical genetics will also be considered.
Given their inherent uncertainty, protein modeling and molecular docking studies should be thoroughly validated. In the absence of experimental results for validation, the use of molecular dynamics simulations along with detailed free energy calculations, for example, should be used as complementary techniques to support the major conclusions. Submissions of premature modeling exercises without additional biological insights will not be considered.
Review articles will generally be commissioned by the editors and should not be submitted to the journal without explicit invitation. However prospective authors are welcome to send a brief (one to three pages) synopsis, which will be evaluated by the editors.